tkamath1 / Kamathetal2022Links
Code to reproduce analyses and figures for Kamath et al., 2022
☆10Updated 3 years ago
Alternatives and similar repositories for Kamathetal2022
Users that are interested in Kamathetal2022 are comparing it to the libraries listed below
Sorting:
- scripts for analyzing data of macrophage development in human☆10Updated 5 years ago
- R package for SIGMA, a clusterability measure for scRNA-seq data☆12Updated 3 years ago
- Repository for scRNAseq study of human kidneys☆15Updated 6 years ago
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆12Updated 2 years ago
- Single-cell RNA-seq analysis from "Single cell transcriptomics reveals spatial and temporal dynamics of gene expression in the developing…☆23Updated 5 years ago
- R package for generalized binary covariance decomposition.☆10Updated this week
- ☆9Updated last year
- Ordering gene-expression and functional events in single-cell experiments☆22Updated last year
- The R package scCODE, a platform for data-specific DE gene detection for scRNA-seq data☆13Updated last year
- CIARA (Cluster Independent Algorithm for the identification of markers of RAre cell types) is an R package that identifies potential mar…☆15Updated 2 years ago
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆32Updated last year
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆31Updated last year
- A record of the analysis pipelines used to create the HTAPP data☆33Updated 3 months ago
- Independent Component Analysis decipher functional modules for better cell clustering and annotation☆16Updated 3 years ago
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆21Updated last year
- ☆15Updated 3 years ago
- ☆13Updated 7 years ago
- Spatiotemporal single-cell RNA sequencing of developing hearts reveals interplay between cellular differentiation and morphogenesis☆13Updated last year
- ☆16Updated 4 years ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆31Updated 7 months ago
- single nuclei RNA-seq analysis toolbox☆10Updated 8 years ago
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- corto (Correlation Tool): an R package to generate correlation-based DPI networks☆20Updated 2 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 8 months ago
- Deconvolution of spatial transcriptomics at single-cell resolution☆18Updated 9 months ago
- sharing interactive single cell gene expression visualizations from Seurat☆10Updated 2 years ago
- R package: ConDecon is a clustering-independent deconvolution method for estimating cell abundances in bulk tissues using single-cell RNA…☆13Updated 9 months ago
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- Single-cell Orientation Tracing☆21Updated 3 years ago
- code for data processing and visualisation associated with the stromal subclasses manuscript☆11Updated 4 years ago