☆41May 13, 2026Updated last week
Alternatives and similar repositories for scDown
Users that are interested in scDown are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆13Mar 23, 2026Updated 2 months ago
- R package for generalized binary covariance decomposition.☆16Jul 13, 2025Updated 10 months ago
- A robust and accurate cell type classifier for single cell RNA-seq data☆17Mar 15, 2023Updated 3 years ago
- Combined clonality and transcriptome scRNAseq clustering method☆11Dec 3, 2022Updated 3 years ago
- NEPAL is to calculate neuroendocrine (NE) risk score from bulk and single-cell transcriptomics of both human and mouse prostate cancer (P…☆14Apr 23, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- An R package for single-cell and spatial omics analysis, integration, interpretation, and visualization.☆246Updated this week
- Toolbox of the Human Neural Organoid Cell Atlas☆33Updated this week
- spSeudoMap: cell type mapping of spatial transcriptomics using unmatched single-cell RNA-seq data☆13Sep 29, 2024Updated last year
- Drug Response Estimation from single-cell Expression Profiles☆12Jan 5, 2024Updated 2 years ago
- ☆55Aug 1, 2024Updated last year
- Metric learning-based graph-partitioned trajectory inference from single-cell data☆12Apr 28, 2023Updated 3 years ago
- Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)☆18Jul 14, 2023Updated 2 years ago
- R package for computing Association Plots☆17Nov 4, 2024Updated last year
- Deposited codes for snMultiome in human cortex manuscript☆13Aug 12, 2024Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆16May 23, 2022Updated 4 years ago
- ☆14Apr 2, 2025Updated last year
- Winter 2021, GGG 298 - Tools for Data Intensive Research - UC Davis☆12Mar 10, 2021Updated 5 years ago
- ☆19Mar 31, 2023Updated 3 years ago
- ☆219Mar 26, 2026Updated last month
- 🐯 tigeR: Tumor Immunotherapy Gene Expression Data Analysis R package☆55Jan 21, 2026Updated 4 months ago
- ☆17Jul 8, 2024Updated last year
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Dec 17, 2021Updated 4 years ago
- This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.☆21Oct 19, 2022Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Multivariate stochastic modeling for transcriptional dynamics with cell-specific latent time using SDEvelo☆21Jan 28, 2025Updated last year
- Variant Graph Craft (VGC) is an interactive genomic variant visualization program.☆18May 17, 2024Updated 2 years ago
- CASSIA: A Multi-Agent LLM-Based Single-Cell Cell Type Annotation Framework☆90May 12, 2026Updated last week
- scWGCNA☆66Nov 8, 2022Updated 3 years ago
- ☆46May 4, 2024Updated 2 years ago
- an integrative analysis tool for analysing large-scale single cell RNA-sequencing data☆37Aug 7, 2023Updated 2 years ago
- R code used to analyze single cell PDAC data☆42Jun 29, 2024Updated last year
- ☆47Jan 11, 2024Updated 2 years ago
- GEO RNA-seq Experiments Processing Pipeline☆22Oct 25, 2019Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- MarcoPolo is a clustering-free approach to the exploration of bimodally expressed genes along with group information in single-cell RNA-s…☆21Nov 17, 2024Updated last year
- a computational framework to identify and characterize cell niches from spatial omics data at single-cell resolution☆53Aug 11, 2025Updated 9 months ago
- Sketch phylogenetic trees and networks☆26May 1, 2026Updated 3 weeks ago
- A pan-cancer analysis of the microbiome in metastatic cancer (Battaglia et. al, Cell, 2024)☆14Apr 9, 2024Updated 2 years ago
- Pathway-based trajectory inference method for time-series scRNAseq data☆26May 18, 2021Updated 5 years ago
- ☆20May 30, 2022Updated 3 years ago
- ☆36Jun 4, 2024Updated last year