☆44Aug 13, 2026Updated 2 weeks ago
Alternatives and similar repositories for scDown
Users that are interested in scDown are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package for generalized binary covariance decomposition.☆16Jul 13, 2025Updated last year
- Automatic annotation of single-cell RNA-seq data from the literature☆48Jul 20, 2025Updated last year
- single-cell Contamination Detection and Correction☆18Jan 15, 2025Updated last year
- ☆13Mar 23, 2026Updated 5 months ago
- 单细胞最佳实践-中文版☆15Apr 6, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A robust and accurate cell type classifier for single cell RNA-seq data☆17Mar 15, 2023Updated 3 years ago
- ☆24Aug 20, 2024Updated 2 years ago
- Combined clonality and transcriptome scRNAseq clustering method☆11Dec 3, 2022Updated 3 years ago
- SIDISH: Semi-supervised Iterative Deep Learning for Identifying Single-cell High-risk Populations☆23Jul 30, 2026Updated last month
- An Agentic AI Framework for Ingestion and Standardization of Single-Cell RNA-seq Data Analysis☆89Aug 6, 2026Updated 3 weeks ago
- scMalignantFinder is a Python package specially designed for analyzing cancer single-cell RNA-seq datasets to distinguish malignant cells…☆23May 13, 2026Updated 3 months ago
- Toolbox of the Human Neural Organoid Cell Atlas☆35Updated this week
- NEPAL is to calculate neuroendocrine (NE) risk score from bulk and single-cell transcriptomics of both human and mouse prostate cancer (P…☆14Apr 23, 2024Updated 2 years ago
- An R package for single-cell and spatial omics analysis, integration, interpretation, and visualization.☆299Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- a computational framework to identify and characterize cell niches from spatial omics data at single-cell resolution☆56Aug 11, 2025Updated last year
- R Package for Single-Cell Dataset Processing and Visualization☆65Jul 26, 2021Updated 5 years ago
- scFOCAL operates through the integration of drug-response transcriptional consensus signatures (TCSs) derived from the LINCS L1000 datase…☆26Jun 23, 2026Updated 2 months ago
- spSeudoMap: cell type mapping of spatial transcriptomics using unmatched single-cell RNA-seq data☆13Sep 29, 2024Updated last year
- Drug Response Estimation from single-cell Expression Profiles☆13Jan 5, 2024Updated 2 years ago
- ☆20Jan 23, 2026Updated 7 months ago
- Add images to StereoSeq/Stomics spatial data and generate an RDS(Seurat) and h5ad (Scanpy).☆15Mar 2, 2025Updated last year
- ☆55Aug 1, 2024Updated 2 years ago
- R package for computing Association Plots☆17Nov 4, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Metric learning-based graph-partitioned trajectory inference from single-cell data☆12Apr 28, 2023Updated 3 years ago
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆266Jul 8, 2026Updated last month
- Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)☆18Jul 14, 2023Updated 3 years ago
- Deposited codes for snMultiome in human cortex manuscript☆14Aug 12, 2024Updated 2 years ago
- Compound ranking predictions from gene expression signatures using ensemble neural network models.☆91Mar 23, 2026Updated 5 months ago
- ☆16May 23, 2022Updated 4 years ago
- ☆39Jun 4, 2024Updated 2 years ago
- Profile purification of single-cell spatial transcriptomics data☆54Jun 29, 2026Updated 2 months ago
- ☆229Jun 13, 2026Updated 2 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Methods for decontamination of single cell data☆68Feb 16, 2025Updated last year
- Patho-DBiT is a platform to spatially decode RNA Biology in archival FFPE tissues.☆16Aug 15, 2024Updated 2 years ago
- ☆14Apr 2, 2025Updated last year
- ☆17Jul 8, 2024Updated 2 years ago
- collected resource for scRNA-seq analysis☆67Jul 19, 2023Updated 3 years ago
- Winter 2021, GGG 298 - Tools for Data Intensive Research - UC Davis☆12Mar 10, 2021Updated 5 years ago
- ☆19Mar 31, 2023Updated 3 years ago