bsml320 / scGWASLinks
A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest and (2) to construct cellular modules which imply disease-specific activation of different processes.
☆26Updated 2 years ago
Alternatives and similar repositories for scGWAS
Users that are interested in scGWAS are comparing it to the libraries listed below
Sorting:
- ☆51Updated last year
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆33Updated 5 months ago
- GWAS genetics Fine-mapping method☆25Updated 11 months ago
- Code for our paper: https://www.biorxiv.org/content/10.1101/528463v1☆18Updated 5 years ago
- Gene Set + S2G strategy annotations analyzed for disease architecture☆54Updated 2 years ago
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆13Updated 2 years ago
- Analytical tools and pipelines for bulk and single cell epigenomic and human genetic data☆27Updated 4 years ago
- identifying disease critical cell types and programs from single cell RNAseq☆57Updated 3 years ago
- ☆38Updated 2 weeks ago
- R package for SIGMA, a clusterability measure for scRNA-seq data☆12Updated 3 years ago
- A robust and accurate cell type classifier for single cell RNA-seq data☆17Updated 2 years ago
- ☆16Updated 2 years ago
- Dynamic Analysis of Alternative Polyadenylation from single-cell RNA-seq (scDaPars)☆17Updated 4 years ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆31Updated 2 years ago
- ☆18Updated last year
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated 2 years ago
- R package of CSOmap(developing☆13Updated 3 years ago
- 🌓 Allele specific analyses across cell states and conditions☆10Updated 2 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆24Updated 2 years ago
- Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"☆20Updated 7 years ago
- ☆18Updated 4 years ago
- Scripts needed to generate the figures for the Monocle 2 paper (Qiu et al, 2017)☆29Updated 5 years ago
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆18Updated 3 years ago
- CELLEX (CELL-type EXpression-specificity)☆43Updated 2 years ago
- codes used in the human kidney eQTL(cf) and eQTL(ci) and snATAC-seq data☆19Updated 4 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 4 years ago
- scripts for analyzing data of macrophage development in human☆10Updated 5 years ago
- Repository for scRNAseq study of human kidneys☆15Updated 6 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆46Updated last year
- Assessing enrichment of complex disease or trait associations among QTLs☆15Updated 5 years ago