A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest and (2) to construct cellular modules which imply disease-specific activation of different processes.
☆29Sep 20, 2022Updated 3 years ago
Alternatives and similar repositories for scGWAS
Users that are interested in scGWAS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- cEll tyPe enrIChment☆17Dec 11, 2022Updated 3 years ago
- Summary-level Unified Method for Modeling Integrated Transcriptome☆10Jun 27, 2023Updated 3 years ago
- ☆31Sep 22, 2023Updated 2 years ago
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆19Jun 29, 2022Updated 4 years ago
- TWAS-pipeline☆24Feb 21, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆21Nov 15, 2024Updated last year
- A ToolKit to perform a Meta-analysis of Genome-Wide Association Studies☆15Feb 9, 2026Updated 5 months ago
- An R package for generating comparative regional association plots☆18Sep 30, 2025Updated 9 months ago
- R package for processing of GWAS output☆17Jul 9, 2024Updated 2 years ago
- Pleiotropy-informed conditional and conjunctional false discovery rate☆38Jun 3, 2025Updated last year
- ☆17Apr 2, 2023Updated 3 years ago
- 🌓 Allele specific analyses across cell states and conditions☆11Nov 28, 2022Updated 3 years ago
- Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.☆47Mar 16, 2026Updated 4 months ago
- Integration of TWAS and Colocalization Analysis☆17Oct 29, 2024Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Functional Inference of Gene Regulation☆54Jul 5, 2024Updated 2 years ago
- hJAM is a hierarchical model which unifies the framework of Mendelian Randomization and Transcriptome-wide association studies.☆11Jan 19, 2024Updated 2 years ago
- Pan cancer summary statistics from meta analyses of UK Biobank and Kaiser GERA cohorts.☆17Jul 15, 2020Updated 6 years ago
- Gene Set + S2G strategy annotations analyzed for disease architecture☆61Nov 18, 2022Updated 3 years ago
- Multi-Omic Strategies for TWAS☆13Mar 27, 2023Updated 3 years ago
- Pipeline that runs two-sample Mendelian randomization on molecular QTLs and GWAS loci and tests for horizontal pleiotropy.☆26Nov 18, 2023Updated 2 years ago
- Epigenomewide Association Studies (EWAS) with FUnctional Summary-based ImputatiON (FUSION)☆12Mar 24, 2023Updated 3 years ago
- Workflow for performing cistrome-wide associations studies☆11Jul 25, 2022Updated 3 years ago
- ☆15Apr 20, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Obtain trait-relevant cell subpopulations by incorporating pathway activity transformed scRNA-seq data with GWAS data☆18Nov 25, 2024Updated last year
- An R package for plotting GWAS results from the GAPIT package☆14Updated this week
- Pipeline for multiplex computing of statistical colocalization via COLOC between GWAS and QTL data.☆21Aug 19, 2025Updated 11 months ago
- ☆11Mar 16, 2022Updated 4 years ago
- Differential expression (DE); gene set Enrichment Analysis (GSEA); single cell RNAseq studies (scRNAseq)☆34Oct 6, 2022Updated 3 years ago
- SCALLOP-INF analysis☆20Jul 7, 2026Updated 2 weeks ago
- Python script for multivariate GWAS meta-analysis☆25Dec 6, 2024Updated last year
- S-LDSC scripts for use on MR server.☆10Sep 23, 2021Updated 4 years ago
- CoMorMent-Containers☆38Jun 8, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆10Mar 11, 2025Updated last year
- Perform cell-stratified MR analysis through integrating GWAS and QTL data☆35Jan 28, 2026Updated 5 months ago
- In this study, we perform systematic comparative analysis of seven widely-used SNV-calling methods, including SAMtools, the GATK Best Pra…☆16Oct 16, 2019Updated 6 years ago
- Genomic Annotation in Livestock for positional candidate LOci☆14Feb 26, 2021Updated 5 years ago
- EXpression PREdiction with Summary Statistics Only☆14Dec 10, 2025Updated 7 months ago
- R script for generating functionally informed genetic risk scores from TWAS☆11Jul 20, 2023Updated 3 years ago
- ☆40Jan 20, 2021Updated 5 years ago