bsml320 / scGWASLinks
A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest and (2) to construct cellular modules which imply disease-specific activation of different processes.
☆26Updated 3 years ago
Alternatives and similar repositories for scGWAS
Users that are interested in scGWAS are comparing it to the libraries listed below
Sorting:
- GWAS genetics Fine-mapping method☆26Updated last year
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆32Updated 8 months ago
- 🌓 Allele specific analyses across cell states and conditions☆10Updated 3 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆47Updated 2 years ago
- Code for our paper: https://www.biorxiv.org/content/10.1101/528463v1☆18Updated 5 years ago
- ☆16Updated last month
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆18Updated 3 years ago
- ☆18Updated 2 years ago
- Code to run the scHLApers pipeline for personalized single-cell HLA quantification☆17Updated last year
- R package for SIGMA, a clusterability measure for scRNA-seq data☆12Updated 3 years ago
- ☆12Updated 6 years ago
- Tissue-Gene Fine-Mapping☆26Updated 8 months ago
- Seismic R package. Discover cell type-trait associations in minutes for GWAS and single-cell RNA-sequencing data☆22Updated last month
- ☆39Updated 3 months ago
- ☆20Updated 2 years ago
- Assessing enrichment of complex disease or trait associations among QTLs☆15Updated 5 years ago
- Analytical tools and pipelines for bulk and single cell epigenomic and human genetic data☆27Updated 5 years ago
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆13Updated 2 years ago
- Gene Set + S2G strategy annotations analyzed for disease architecture☆56Updated 3 years ago
- ☆15Updated 2 years ago
- R package for Flexible dot plots☆29Updated 3 years ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆31Updated 2 years ago
- ☆18Updated last year
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- identifying disease critical cell types and programs from single cell RNAseq☆57Updated 3 years ago
- Network construction Algorithm☆22Updated last year
- CELLEX (CELL-type EXpression-specificity)☆43Updated 2 years ago
- Bead-based single-cell atac processing☆33Updated 4 years ago
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆38Updated 2 years ago
- ☆52Updated last year