bsml320 / scGWASLinks
A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest and (2) to construct cellular modules which imply disease-specific activation of different processes.
☆26Updated 2 years ago
Alternatives and similar repositories for scGWAS
Users that are interested in scGWAS are comparing it to the libraries listed below
Sorting:
- ☆49Updated last year
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆33Updated 4 months ago
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆13Updated 2 years ago
- Gene Set + S2G strategy annotations analyzed for disease architecture☆53Updated 2 years ago
- GWAS genetics Fine-mapping method☆25Updated 10 months ago
- ☆37Updated last year
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆31Updated 2 years ago
- Code for our paper: https://www.biorxiv.org/content/10.1101/528463v1☆18Updated 5 years ago
- identifying disease critical cell types and programs from single cell RNAseq☆57Updated 3 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated last year
- Analytical tools and pipelines for bulk and single cell epigenomic and human genetic data☆27Updated 4 years ago
- ☆18Updated 4 years ago
- Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"☆20Updated 7 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆24Updated 2 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 4 years ago
- Code to run the scHLApers pipeline for personalized single-cell HLA quantification☆17Updated last year
- ☆12Updated 5 years ago
- ☆27Updated last year
- ☆15Updated 2 years ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆17Updated 4 months ago
- 🌓 Allele specific analyses across cell states and conditions☆10Updated 2 years ago
- Code for the manuscript "Single-cell analysis of human primary prostate cancer reveals the heterogeneity of tumor-associated epithelial c…☆23Updated 3 years ago
- A robust and accurate cell type classifier for single cell RNA-seq data☆16Updated 2 years ago
- CELLEX (CELL-type EXpression-specificity)☆43Updated 2 years ago
- ☆32Updated 7 months ago
- ☆18Updated last year
- ☆17Updated 2 years ago
- ☆27Updated 4 years ago
- ☆17Updated last year
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆38Updated 2 years ago