hammerlab / multi-omic-urothelial-anti-pdl1View external linksLinks
Contribution of systemic and somatic factors to clinical response and resistance in urothelial cancer: an exploratory multi-omic analysis
☆24Oct 31, 2017Updated 8 years ago
Alternatives and similar repositories for multi-omic-urothelial-anti-pdl1
Users that are interested in multi-omic-urothelial-anti-pdl1 are comparing it to the libraries listed below
Sorting:
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆54Feb 12, 2018Updated 8 years ago
- R package to do enrichment analysis for neoantigens☆13Feb 21, 2022Updated 3 years ago
- Multifactorial modeling of response to checkpoint inhibitor immunotherapy from tumor, immune, and clinical features☆17Jun 29, 2018Updated 7 years ago
- ☆41Apr 16, 2018Updated 7 years ago
- ☆12Dec 5, 2018Updated 7 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆30Aug 30, 2019Updated 6 years ago
- ☆30Jul 8, 2018Updated 7 years ago
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆35Jan 28, 2022Updated 4 years ago
- code and data for Liu, Schilling, et al Nat Med 2019☆17Aug 1, 2024Updated last year
- Calculating Tumor microenvironment score☆29Jan 20, 2023Updated 3 years ago
- Python function for TMB snake plots☆16Aug 6, 2020Updated 5 years ago
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆33Sep 16, 2021Updated 4 years ago
- Integrating LASSO and bootstrapping algorithm to find best prognostic or predictive biomarkers☆21Oct 12, 2022Updated 3 years ago
- A framework to infer mutational signatures in cancer over time☆56Jul 9, 2019Updated 6 years ago
- An R Interface to the ImmuneSpace database portal☆24Nov 28, 2023Updated 2 years ago
- Source code and data for "Pan-cancer analysis of bi-allelic alterations in homologous recombination (HR) DNA repair genes" ; See manuscri…☆13May 26, 2017Updated 8 years ago
- Testing a neutral evolution model on cancer sequencing data☆10Feb 17, 2021Updated 5 years ago
- ☆10Dec 4, 2019Updated 6 years ago
- Inferring selection in cancer sequencing data using ABC and population based simulations☆11Jan 31, 2021Updated 5 years ago
- ☆13Apr 22, 2021Updated 4 years ago
- CircRNA testing and ploting R package☆10Nov 23, 2020Updated 5 years ago
- Slides for my RLadies NYC Presentation☆11Feb 27, 2020Updated 5 years ago
- 📝 [Tutorial] RepSeq data mining basics in R☆11Mar 13, 2019Updated 6 years ago
- CellNet, for cancer☆10Jul 14, 2022Updated 3 years ago
- 是基础也是综合(一系列对象及函数,需要细致的讲解)☆30Apr 9, 2016Updated 9 years ago
- Tool for analyzing the inter-mutational distances between SNV-SNV and INDEL-INDEL mutations. Tool separates mutations into clustered and …☆14Feb 11, 2026Updated last week
- This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources…☆73Jul 26, 2018Updated 7 years ago
- anor: an annotation and visualization system based on R and Shiny framework☆33Apr 20, 2020Updated 5 years ago
- ☆18May 8, 2023Updated 2 years ago
- R scripts used for MYC analyses☆10Jan 30, 2018Updated 8 years ago
- ☆11Apr 25, 2024Updated last year
- Prostate Cancer Alteration Signature Analysis https://xsliulab.github.io/PC_CNA_signature/☆13May 17, 2021Updated 4 years ago
- Calculate NEPC risk score from bulk transcriptome data or single-cell RNA-seq for prostate cancer☆16Nov 30, 2024Updated last year
- ESTIMATE tumor infiltration, the tidy way☆17Aug 22, 2023Updated 2 years ago
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Aug 25, 2020Updated 5 years ago
- This repository contained single-cell RNA-seq datasets with ICB treated patients☆14Nov 8, 2024Updated last year
- ☆13Oct 7, 2019Updated 6 years ago
- DISCOVER co-occurrence and mutual exclusivity analysis for cancer genomics data☆32May 1, 2025Updated 9 months ago
- Transcriptomic classifier for Muscle-Invasive Bladder Cancer☆15Oct 5, 2022Updated 3 years ago