Multi-resolution Variational Inference
☆22Updated this week
Alternatives and similar repositories for mrvi_archive
Users that are interested in mrvi_archive are comparing it to the libraries listed below
Sorting:
- Python code for cross-condition label refinement in single-cell data with HiDDEN☆14Sep 21, 2024Updated last year
- Genotype-Neighborhood Associations: A tool for identifying genetic variant associations to the abundance of cell states in single-cell d…☆16Oct 5, 2024Updated last year
- Framework for sensitive DE testing (using neighbourhoods)☆77Nov 11, 2025Updated 3 months ago
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆12Aug 17, 2023Updated 2 years ago
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆14Oct 21, 2024Updated last year
- ☆16Sep 1, 2023Updated 2 years ago
- Code used for muti cellular factor analysis☆16Dec 13, 2023Updated 2 years ago
- ☆63Sep 13, 2024Updated last year
- ☆13Sep 3, 2025Updated 5 months ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆76Nov 2, 2025Updated 3 months ago
- Pairwise Hierarchical Model☆20Mar 11, 2022Updated 3 years ago
- A set of files to do genomics analysis on python☆18Jun 5, 2025Updated 8 months ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆39Nov 10, 2025Updated 3 months ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆66Feb 11, 2026Updated 2 weeks ago
- Multi-omic velocity inference☆116Oct 23, 2024Updated last year
- ☆13Jun 15, 2024Updated last year
- ☆41Jun 24, 2025Updated 8 months ago
- Python package for Probe set selection for targeted spatial transcriptomics.☆48Nov 8, 2025Updated 3 months ago
- Reproducibility for the "Harmonization and Annotation of Single-cell Transcriptomics data with Deep Generative Models" paper☆13Jul 15, 2022Updated 3 years ago
- PULSAR: a Foundation Model for Multi-scale and Multicellular Biology☆28Updated this week
- This is the repository which contains the code that was used to generate the results and figures of the “Single-cell RNA-sequencing revea…☆12Jun 21, 2024Updated last year
- An efficient tool for large-scale correlation network analysis☆14Dec 27, 2024Updated last year
- ☆11May 5, 2023Updated 2 years ago
- Unsupervised Deep Disentangled Representation of Single-Cell Omics☆60Updated this week
- Interactive visualisation of CellphoneDB results☆11Jan 15, 2025Updated last year
- Simplified script for applying the t-SNE diff method on high parameter flow cytometry data☆11Oct 31, 2023Updated 2 years ago
- software to detect doublets☆96Dec 28, 2024Updated last year
- Accelerated, Python-only, single-cell integration benchmarking metrics☆86Updated this week
- Aligning gene expression trajectories of single-cell reference and query systems☆83Aug 10, 2025Updated 6 months ago
- Python implementation of Milo for differential abundance testing on KNN graph☆81Feb 17, 2025Updated last year
- Finding gene expression states in scRNA-seq data☆50Mar 22, 2024Updated last year
- Camiel's scATAC-seq analysis pipeline☆13Apr 15, 2024Updated last year
- Automated ingestion and conversion of various single-cell data formats, within and across species☆13Jan 26, 2026Updated last month
- ☆11Sep 17, 2020Updated 5 years ago
- Code to reproduce analyses and figures for Kamath et al., 2022☆12May 5, 2022Updated 3 years ago
- scover☆24Nov 3, 2023Updated 2 years ago
- Python implementation of Gene Trajectory☆30Sep 4, 2024Updated last year
- muon is a multimodal omics Python framework☆262Jan 19, 2026Updated last month
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆31Mar 7, 2025Updated 11 months ago