shendurelab / single-cell-ko-screensLinks
Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hill, McFaline-Figueroa et al.
☆26Updated 3 years ago
Alternatives and similar repositories for single-cell-ko-screens
Users that are interested in single-cell-ko-screens are comparing it to the libraries listed below
Sorting:
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆75Updated 2 years ago
- ☆47Updated 8 months ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 3 years ago
- ☆43Updated 4 years ago
- ☆30Updated 7 years ago
- Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"☆20Updated 7 years ago
- Algorithm for the inference of cell types from single-cell RNA-seq data.☆45Updated 9 years ago
- R package for robust clustering of single cell RNA sequencing data☆35Updated last year
- Scripts needed to generate the figures for the Monocle 2 paper (Qiu et al, 2017)☆29Updated 5 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆27Updated 4 years ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated 2 years ago
- scRNA-seq cell type identification☆43Updated 6 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- ☆41Updated 7 years ago
- Single-cell Case Control Analysis☆52Updated this week
- ☆20Updated 6 years ago
- ☆34Updated 6 years ago
- Repo for website and other code for mouse sci-ATAC-seq project☆28Updated 5 years ago
- ☆47Updated 5 years ago
- <<------ Use SnapATAC!!☆26Updated 6 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆33Updated 6 months ago
- scWGCNA☆61Updated 2 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆42Updated 4 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆46Updated last year
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- R package for Flexible dot plots☆29Updated 3 years ago
- ☆55Updated 4 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 5 years ago