mckennalab / SingleCellLineageLinks
Updated scripts and pipelines for processing GESTALT data at single-cell resolution
☆19Updated 4 years ago
Alternatives and similar repositories for SingleCellLineage
Users that are interested in SingleCellLineage are comparing it to the libraries listed below
Sorting:
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated last year
- ☆29Updated 2 years ago
- ☆43Updated 4 years ago
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆35Updated last year
- Overview of the scripts used to analyse the brainimmuneatlas data☆19Updated 5 years ago
- Code repository for the snRNA-seq cross-tissue atlas project☆21Updated 3 years ago
- Repository for scRNAseq study of human kidneys☆15Updated 6 years ago
- Single-cell RNA-seq analysis from "Single cell transcriptomics reveals spatial and temporal dynamics of gene expression in the developing…☆25Updated 5 years ago
- Single-cell Case Control Analysis☆52Updated last week
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated last year
- Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile☆21Updated 2 years ago
- Landscape Single Cell Entropy☆21Updated 5 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆43Updated 3 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆56Updated 6 months ago
- R package expanding integrative analysis capabilities of Seurat by providing seamless access to popular integration methods and to an int…☆31Updated 3 months ago
- ☆50Updated 5 years ago
- Single-cell Orientation Tracing☆21Updated 3 years ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 6 years ago
- ☆30Updated 3 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆40Updated 4 years ago
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆38Updated 3 weeks ago
- This repository contains HCA Benchmarking codes☆26Updated 6 years ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆44Updated 3 years ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated last year
- Single-Cell Sequencing Quality Control and Processing Software☆30Updated 6 years ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 3 years ago
- Independent Component Analysis decipher functional modules for better cell clustering and annotation☆17Updated 3 years ago
- CellRank's reproducibility repository.☆16Updated 3 years ago