mckennalab / SingleCellLineageLinks
Updated scripts and pipelines for processing GESTALT data at single-cell resolution
☆19Updated 4 years ago
Alternatives and similar repositories for SingleCellLineage
Users that are interested in SingleCellLineage are comparing it to the libraries listed below
Sorting:
- COMUNET: a tool to explore and visualize intercellular communication☆12Updated 5 years ago
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆32Updated last year
- ☆41Updated 4 years ago
- Single-cell Orientation Tracing☆21Updated 3 years ago
- Single-cell Case Control Analysis☆50Updated 8 months ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 8 months ago
- ☆29Updated 2 years ago
- Repository for scRNAseq study of human kidneys☆15Updated 6 years ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated 3 weeks ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆41Updated 2 years ago
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- ☆39Updated 3 years ago
- Single-cell RNA-seq analysis from "Single cell transcriptomics reveals spatial and temporal dynamics of gene expression in the developing…☆23Updated 5 years ago
- Code repository for the snRNA-seq cross-tissue atlas project☆20Updated 3 years ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆34Updated 4 years ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated 10 months ago
- ☆19Updated 2 months ago
- scWGCNA☆61Updated 2 years ago
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- ☆28Updated 3 years ago
- ☆13Updated last year
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆39Updated 3 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆53Updated last month
- Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile☆20Updated last year
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated 8 months ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆31Updated last year
- Ordering gene-expression and functional events in single-cell experiments☆22Updated last year
- Clone identification from single-cell data☆62Updated 2 years ago