Simplified script for applying the t-SNE diff method on high parameter flow cytometry data
☆10Oct 31, 2023Updated 2 years ago
Alternatives and similar repositories for Cross-Entropy-test
Users that are interested in Cross-Entropy-test are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Scalable, downsampling-free automated cell-population discovery, feature engineering, classification and visualization of single-cell (mo…☆12Aug 30, 2021Updated 4 years ago
- R package: AutoSpill algorithm for calculating spillover coefficients to compensate or unmix high-parameter flow cytometry data☆21Jun 17, 2021Updated 5 years ago
- Using self-organizing maps for visualization and interpretation of cytometry data☆35Apr 10, 2026Updated 2 months ago
- Using self-organizing maps for visualization and interpretation of cytometry data☆70Dec 13, 2023Updated 2 years ago
- Code to reproduce analyses and figures for Kamath et al., 2022☆13May 5, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- An R package for correcting p-values for multiple hypothesis testing in comparative quantitative omics experiments using permutation-base…☆12Mar 11, 2026Updated 3 months ago
- Python code for cross-condition label refinement in single-cell data with HiDDEN☆14Sep 21, 2024Updated last year
- ☆12May 30, 2023Updated 3 years ago
- Genotype-Neighborhood Associations: A tool for identifying genetic variant associations to the abundance of cell states in single-cell d…☆18Oct 5, 2024Updated last year
- distinct: a method for differential analyses via hierarchical permutation tests☆13Dec 4, 2023Updated 2 years ago
- CIARA (Cluster Independent Algorithm for the identification of markers of RAre cell types) is an R package that identifies potential mar…☆17Jan 1, 2026Updated 6 months ago
- code for tutorials, office hours, and other help i've given☆13Jun 4, 2025Updated last year
- An R package to produce full spectrum flow cytometry plots outside the acquisition software.☆11May 9, 2023Updated 3 years ago
- detecting spatial patterns of allele-specific expression☆11May 22, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Tools for Unmixing Spectral Flow Cytometry Data☆35Jun 15, 2026Updated 2 weeks ago
- R library to normalize cytometry data☆40Jan 16, 2026Updated 5 months ago
- Peak-based selection of high quality cytometry data☆21Feb 23, 2026Updated 4 months ago
- eQTLHap: a comprehensive eQTL analysis tool.☆11Apr 15, 2021Updated 5 years ago
- This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.☆22Oct 19, 2022Updated 3 years ago
- The dysbiosisR package implements tools for calculating some common microbiome dysbiosis measures☆16Dec 2, 2022Updated 3 years ago
- Systematically learn and evaluate the latent geometry of high-dimensional data, with a focus on scRNAseq analysis☆107Apr 1, 2026Updated 3 months ago
- This repository contains the installation zip file, user manual, example data, and source code for the PyXlinkViewer plugin for PyMOL v2☆10Jul 3, 2023Updated 2 years ago
- Framework for building R interfaces to shell commands☆17Oct 12, 2020Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Imaging Mass Cytometry (IMC) file type support for napari☆13Oct 19, 2023Updated 2 years ago
- single cell Gene co-Expression Network Analysis☆10Sep 6, 2022Updated 3 years ago
- Code for reproducing results from the paper "RNA velocity and protein acceleration from single-cell multiomics experiments."☆11Feb 1, 2020Updated 6 years ago
- Common Factor Integration & Transfer learning (cFIT) for single cell RNA-seq data☆13Jul 6, 2021Updated 4 years ago
- Multi-resolution Variational Inference☆23May 25, 2026Updated last month
- A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.☆21Jul 24, 2023Updated 2 years ago
- Documentation for PEP specification and all PEPkit software☆10Mar 25, 2026Updated 3 months ago
- The source code to the Website of www.ankicollab.com☆18Jun 2, 2026Updated 3 weeks ago
- A Thermo XCalibur Method (.meth) file reader, extracter, and converter command-line program for mass spectrometry researchers.☆13Jan 13, 2019Updated 7 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆39Aug 10, 2023Updated 2 years ago
- ☆14Apr 12, 2025Updated last year
- A database of useful gene signatures for single-cell analysis☆29May 19, 2025Updated last year
- ☆15Jan 23, 2026Updated 5 months ago
- Calculation of distance metrics for matrices☆26Mar 1, 2019Updated 7 years ago
- Mosaic single cell data integration using non-overlapping features☆39Sep 20, 2022Updated 3 years ago
- ☆35Jun 8, 2026Updated 3 weeks ago