AdrianListon / Cross-Entropy-testLinks
Simplified script for applying the t-SNE diff method on high parameter flow cytometry data
☆11Updated 2 years ago
Alternatives and similar repositories for Cross-Entropy-test
Users that are interested in Cross-Entropy-test are comparing it to the libraries listed below
Sorting:
- Brings SingleCellExperiment objects to the tidyverse☆36Updated last month
- Single-cell analysis with non-negative matrix factorization☆45Updated 4 months ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆21Updated 2 years ago
- R wrappers to connect Python dimensional reduction tools and single cell data objects (Seurat, SingleCellExperiment, etc...)☆36Updated 11 months ago
- R implementation of the Reshef and Rumker CNA method (https://github.com/immunogenomics/cna)☆15Updated 2 years ago
- This R package for performing module repertoire analyses and generating fingerprint representations☆16Updated 4 years ago
- Wrapper and helper functions to use bulk RNA-seq differential expression methods with single-cell data☆21Updated last year
- Cell type pipes for R☆52Updated last year
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆38Updated 3 years ago
- Pathway-based trajectory inference method for time-series scRNAseq data☆25Updated 4 years ago
- Convert your single-cell/spatial analyses to parallel HPC/cloud workflows just using pipes in R☆15Updated 11 months ago
- Extension of SpatialExperiment with sf☆56Updated this week
- R package for benchmarking single cell analysis methods☆32Updated 2 years ago
- Calculation of distance metrics for matrices☆26Updated 6 years ago
- An r package that works as a wrapper to homologene☆47Updated 2 years ago
- scDataviz: single cell dataviz and downstream analyses☆65Updated 4 years ago
- Antique or modern atlas-like depictions of non-linear dimensionality reduction for single cell data☆18Updated 5 months ago
- ☆16Updated 8 months ago
- Alignability testing and integration of single-cell data☆21Updated last year
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆40Updated 4 years ago
- Toolkit for Single-Cell Velocity☆58Updated 5 months ago
- A wrapper around the sleepwalk package that allows for interactive knn visualizations of an embedding.☆21Updated last year
- ☆21Updated 3 years ago
- distinct: a method for differential analyses via hierarchical permutation tests☆11Updated 2 years ago
- Clone of the Bioconductor repository for the scRNAseq package.☆29Updated 2 months ago
- R package for specialised analysis of single cell data☆40Updated 3 years ago
- ☆30Updated last week
- Shiny app for the analysis of single cell data☆26Updated 3 weeks ago
- R package for gene selection using k-NN graphs.☆13Updated 2 years ago
- An R-based interface for loom files☆67Updated 5 years ago