quadbio / VoxHunt
VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps
☆44Updated last year
Alternatives and similar repositories for VoxHunt:
Users that are interested in VoxHunt are comparing it to the libraries listed below
- ☆31Updated 7 months ago
- ☆33Updated last year
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆31Updated last year
- Single cell RNA-seq analysis for transcriptomic type characterization☆36Updated 3 weeks ago
- ☆46Updated 11 months ago
- ☆49Updated 7 years ago
- Scripts related to VISp and ALM scRNA-seq and FISH analysis for Tasic, et al., 2018.☆24Updated 6 years ago
- A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA seq…☆60Updated this week
- ☆14Updated last year
- Overview of the scripts used to analyse the brainimmuneatlas data☆19Updated 4 years ago
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆34Updated last year
- ☆38Updated 3 months ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆48Updated 3 weeks ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆26Updated 3 months ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆52Updated 5 months ago
- R package for specialised analysis of single cell data☆38Updated 2 years ago
- A toolset for analysis and visualisation of Spatial Transcriptomics datasets.☆18Updated 3 years ago
- .h5mu files interface for Seurat☆28Updated last year
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- Repository for storing prototype functionality implementations for the BKP☆23Updated last week
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- ☆19Updated 5 years ago
- Quasilinear data representations for single-cell omics data analysis☆42Updated last year
- Code to go along with https://doi.org/10.1016/j.cell.2022.09.010☆20Updated 3 years ago
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆33Updated 3 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆38Updated 2 years ago
- iterative clustering pipeline of big single cell datasets.☆29Updated last month
- Data and code for the paper "Developmental diversification of cortical inhibitory interneurons"☆24Updated 6 years ago
- Using self-organizing maps for visualization and interpretation of cytometry data☆26Updated this week