VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps
☆48Mar 1, 2024Updated 2 years ago
Alternatives and similar repositories for VoxHunt
Users that are interested in VoxHunt are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆28Apr 1, 2025Updated last year
- Toolbox of the Human Neural Organoid Cell Atlas☆33Apr 27, 2026Updated last week
- Multiome GRN inference.☆135Apr 10, 2026Updated 3 weeks ago
- Reusable scripts and functions archive for the paper "Organoid single-cell genomic atlas uncovers human-specific features of brain develo…☆39Aug 2, 2021Updated 4 years ago
- Granular Functional Filtering (Gruffi) to isolate stressed cells☆13Nov 7, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Single-cell Case Control Analysis☆57Feb 26, 2026Updated 2 months ago
- Clone of the Bioconductor repository for the MouseGastrulationData package.☆13Jan 24, 2024Updated 2 years ago
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆40Mar 31, 2026Updated last month
- Code to go along with https://doi.org/10.1016/j.cell.2022.09.010☆21Mar 16, 2022Updated 4 years ago
- Capybara: A computational tool to measure cell identity and fate transitions☆62May 23, 2022Updated 3 years ago
- Reproducibility repository for the Human Neural Organoid Atlas publication☆47Dec 16, 2024Updated last year
- Tutorial for scRNA-seq data analysis beginners using R☆258Mar 5, 2025Updated last year
- Code to go along with Velasco et. al.☆11Jun 5, 2019Updated 6 years ago
- Automated ingestion and conversion of various single-cell data formats, within and across species☆13Jan 26, 2026Updated 3 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Latent spaces for single cells☆21Oct 31, 2023Updated 2 years ago
- Lineage Tracing by Integrating Mutation and Transcriptomic data☆13Jun 16, 2020Updated 5 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆48Jul 20, 2022Updated 3 years ago
- R package for Bioconductor submission☆40Dec 8, 2022Updated 3 years ago
- Repository detailing updated allowlisting and clonal analysis workflow☆10Feb 1, 2025Updated last year
- Cell-cell communication and lineage inference for scRNA-seq data☆25May 3, 2023Updated 3 years ago
- ☆16Jun 11, 2019Updated 6 years ago
- ☆45Jun 27, 2023Updated 2 years ago
- AD regulome analysis☆16Apr 4, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Repository for storing prototype functionality implementations for the BKP☆47Apr 3, 2026Updated last month
- Chromatin States Map in mouse embryonic stem cell☆19Apr 11, 2018Updated 8 years ago
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆171Jan 26, 2024Updated 2 years ago
- Exercises for training scientists to perform some RNA-seq analyses.☆11Oct 7, 2019Updated 6 years ago
- ☆12Oct 4, 2021Updated 4 years ago
- ☆31Apr 9, 2022Updated 4 years ago
- ☆41Oct 24, 2025Updated 6 months ago
- Single-cell RNA-seq analysis from "Single cell transcriptomics reveals spatial and temporal dynamics of gene expression in the developing…☆27May 12, 2020Updated 5 years ago
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆41Mar 20, 2023Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Accurate and fast cell marker gene identification with COSG☆64Feb 8, 2026Updated 2 months ago
- Data and analysis scripts for our Embryo Timecourse paper.☆68Dec 16, 2019Updated 6 years ago
- Spatial reconstruction of dissociated single-cell data☆19Jan 12, 2024Updated 2 years ago
- Repository for the clone2vec python package☆15Apr 10, 2026Updated 3 weeks ago
- A R package for advanced single cell data viz☆74Aug 29, 2025Updated 8 months ago
- Demultiplexing pooled scRNA-seq data with or without genotype reference☆99Apr 11, 2025Updated last year
- A single-cell RNA-seq pipeline☆27Apr 12, 2023Updated 3 years ago