☆36Oct 4, 2024Updated 2 years ago
Alternatives and similar repositories for ChromaFold
Users that are interested in ChromaFold are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆10Jan 22, 2026Updated 8 months ago
- ☆21Dec 15, 2023Updated 2 years ago
- Code for the analysis performed in the paper "Deep learning the cis-regulatory code of chromatin dynamics during cellular reprogramming" …☆18Oct 16, 2025Updated last year
- Parse ArchR arrow files to anndata h5ad☆17Dec 14, 2023Updated 2 years ago
- SCENIC+ analyses☆19Sep 26, 2023Updated 3 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- ☆20Aug 25, 2026Updated last month
- R package to detect breakpoints and assign somies to scATAC-seq data☆43Dec 1, 2025Updated 10 months ago
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆19Apr 20, 2024Updated 2 years ago
- ☆11Oct 8, 2026Updated last week
- ☆34Jul 7, 2026Updated 3 months ago
- R package for computing Association Plots☆17Nov 4, 2024Updated last year
- The scripts used for the analyses in TOME project☆26Nov 28, 2025Updated 10 months ago
- ☆69Apr 22, 2026Updated 5 months ago
- Probability Model of Accessible Chromatin of Single cells☆11Aug 14, 2026Updated 2 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Combined clonality and transcriptome scRNAseq clustering method☆11Dec 3, 2022Updated 3 years ago
- ☆31Sep 28, 2019Updated 7 years ago
- ☆13Jun 28, 2024Updated 2 years ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆135Aug 3, 2026Updated 2 months ago
- ☆17Sep 27, 2026Updated 2 weeks ago
- Camiel's scATAC-seq analysis pipeline☆15Apr 15, 2024Updated 2 years ago
- ☆12Dec 21, 2021Updated 4 years ago
- ☆13Jul 21, 2021Updated 5 years ago
- Single-cell Hi-C data analysis toolbox☆28Aug 13, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Code & documentation for Multiomics and deep learning dissect regulatory syntax in human development (Liu*, Jessa*, Kim*, Ng*, et al, Nat…☆34Jul 17, 2026Updated 3 months ago
- Gene regulatory network inference for RNA velocity and pseudotime data☆29Nov 6, 2025Updated 11 months ago
- Functional Inference of Gene Regulation☆56Jul 5, 2024Updated 2 years ago
- Snakemake workflow for comparing E-G links to experimental data☆25Sep 10, 2026Updated last month
- Chromatin interaction aware gene regulatory modeling with graph attention networks☆32Feb 21, 2023Updated 3 years ago
- Multivariate stochastic modeling for transcriptional dynamics with cell-specific latent time using SDEvelo☆21Jan 28, 2025Updated last year
- Whole mouse brain snATAC seq analysis☆29Apr 18, 2025Updated last year
- Swift Phenotypic Analysis of Cells☆12Jun 8, 2025Updated last year
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆32Aug 8, 2023Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Learning motif contributions to cell transitions using sequence features and graphs.☆27Aug 30, 2024Updated 2 years ago
- Code and data sharing of Liu et al. 2023 manuscript☆19Apr 18, 2023Updated 3 years ago
- Deconvolution of spatial transcriptomics at single-cell resolution☆23Mar 25, 2026Updated 6 months ago
- ☆27Apr 15, 2025Updated last year
- scDoRI (single-cell Deep multi-Omic Regulatory Inference) is a deep learning model to infer enhancer-mediated gene regulatory networks (e…☆39Aug 15, 2026Updated 2 months ago
- An end-to-end computational pipeline for large Perturb-seq screens☆16Jul 27, 2026Updated 2 months ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆27Feb 22, 2025Updated last year