viannegao / ChromaFoldLinks
☆30Updated last year
Alternatives and similar repositories for ChromaFold
Users that are interested in ChromaFold are comparing it to the libraries listed below
Sorting:
- scOpen: single-cell open chromatin analysis via NMF modelling☆28Updated 2 years ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 11 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆66Updated 5 months ago
- Nextflow pipeline for cross-species integration and assessment of single cell RNA-seq datasets☆41Updated 5 months ago
- ACTIONet single-cell analysis framework☆44Updated last year
- Molecular interactions inference from single-cell multi-omics data☆29Updated last month
- Pipeline to run scE2G☆32Updated last month
- Functional Inference of Gene Regulation☆49Updated last year
- This repository contains codes used for the human fetal limb cell atlas.☆17Updated 10 months ago
- Gene regulatory network inference for RNA velocity and pseudotime data☆27Updated last month
- The scripts used for the analyses in TOME project☆25Updated 3 weeks ago
- ☆46Updated last year
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated 3 months ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆43Updated last year
- ☆56Updated last year
- cell type specific, trait-associated gene regulation☆29Updated 8 months ago
- Parse ArchR arrow files to anndata h5ad☆15Updated 2 years ago
- Gene group activity utility functions for Scanpy☆99Updated 11 months ago
- ☆40Updated 5 months ago
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆41Updated 2 years ago
- Imputation method for scRNA-seq based on low-rank approximation☆77Updated 2 years ago
- Co-accessibility network from single-cell ATAC-seq data. Python code with AnnData, based on Cicero algorithm.☆29Updated 3 weeks ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago
- ☆37Updated last year
- Single cell omics biology annotations☆51Updated 8 months ago
- ☆40Updated this week
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆44Updated 4 months ago
- ☆35Updated 9 months ago
- ScoMAP is an R package to spatially integrate single-cell omics data into virtual cells and infer enhancer-to-gene relationships.☆27Updated 4 years ago
- An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)☆37Updated last year