bsungwoo / spSeudoMapLinks
spSeudoMap: cell type mapping of spatial transcriptomics using unmatched single-cell RNA-seq data
☆13Updated last year
Alternatives and similar repositories for spSeudoMap
Users that are interested in spSeudoMap are comparing it to the libraries listed below
Sorting:
- ☆52Updated 3 months ago
- CeLEry: cell location recovery in single-cell RNA sequencing☆37Updated 11 months ago
- ☆43Updated 8 months ago
- Spatial direct messaging detected by bivariate Moran☆32Updated 6 months ago
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆41Updated last year
- GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data☆70Updated 2 months ago
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆54Updated last year
- ☆32Updated 11 months ago
- UniCell Deconvolve - Cloud Cell Type Deconvolution For Transcriptomic Data☆27Updated 2 years ago
- The benchmarking of spatial transcriptomics deconvolution methods☆34Updated 2 years ago
- ☆40Updated 3 years ago
- Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional…☆27Updated last year
- Code used to benchmark Xenium☆73Updated last year
- domain adaptation of spatial and single-cell transcriptome☆28Updated last year
- Spatial Cellular Estimator for Tumors☆60Updated last month
- ☆24Updated last year
- ☆23Updated 2 weeks ago
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆41Updated last year
- ☆40Updated 2 years ago
- The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains☆34Updated 9 months ago
- Deciphering tumor ecosystems at super-resolution from spatial transcriptomics with TESLA☆64Updated last year
- The current study provides a comprehensive insights into the PDAC metastatic biology.☆25Updated last year
- ☆20Updated 4 years ago
- Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets☆32Updated 2 years ago
- UniTVelo, Temporally Unified RNA Velocity for single cell trajectory inference☆27Updated last year
- ☆60Updated last year
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆58Updated this week
- Gene group activity utility functions for Scanpy☆100Updated last year
- Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…☆31Updated 3 years ago
- Detect hierarchical structures in cell-cell communications☆16Updated last year