bsungwoo / spSeudoMapLinks
spSeudoMap: cell type mapping of spatial transcriptomics using unmatched single-cell RNA-seq data
☆13Updated 10 months ago
Alternatives and similar repositories for spSeudoMap
Users that are interested in spSeudoMap are comparing it to the libraries listed below
Sorting:
- ☆35Updated 2 months ago
- ☆49Updated 2 months ago
- UniCell Deconvolve - Cloud Cell Type Deconvolution For Transcriptomic Data☆26Updated 2 years ago
- Spatial direct messaging detected by bivariate Moran☆27Updated 2 weeks ago
- CeLEry: cell location recovery in single-cell RNA sequencing☆35Updated 5 months ago
- ☆19Updated 3 years ago
- A computational method to rank and infer drug-responsive cell population towards in-silico drug perturbation using a target-perturbed gen…☆51Updated last month
- ☆40Updated 2 years ago
- Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional…☆26Updated 10 months ago
- Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…☆31Updated 2 years ago
- ☆31Updated 5 months ago
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆37Updated 6 months ago
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆36Updated last year
- ☆37Updated 2 years ago
- The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains☆32Updated 3 months ago
- The benchmarking of spatial transcriptomics deconvolution methods☆32Updated 2 years ago
- Spatial Cellular Estimator for Tumors☆56Updated last week
- ☆17Updated 9 months ago
- Implementation of CellNEST method☆39Updated last week
- Single-Cell Inference of Class Switch Recombination☆19Updated 4 months ago
- Code used to benchmark Xenium☆64Updated last year
- scRNA-seq analysis of EENT-ONB☆22Updated last year
- UniTVelo, Temporally Unified RNA Velocity for single cell trajectory inference☆26Updated 8 months ago
- Gene group activity utility functions for Scanpy☆83Updated 7 months ago
- Deciphering tumor ecosystems at super-resolution from spatial transcriptomics with TESLA☆58Updated last year
- RA Synovial Single-cell Multimodal Cell Atlas☆16Updated last year
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆76Updated 3 months ago
- Spot pseudo-Imager on top of histology☆40Updated 4 months ago
- De novo reconstruction of cell interaction landscapes from single-cell spatial transcriptome data☆18Updated 2 years ago
- domain adaptation of spatial and single-cell transcriptome☆27Updated 10 months ago