antigenomics / tcr-annotation-methodology
π [Paper/Tutorial] T-cell repertoire annotation and motif discovery
β13Updated 4 years ago
Alternatives and similar repositories for tcr-annotation-methodology:
Users that are interested in tcr-annotation-methodology are comparing it to the libraries listed below
- βοΈ Matching T-cell repertoire against a database of TCR antigen specificitiesβ38Updated 6 years ago
- Using TCR and expression for sequence embeddingβ53Updated 2 months ago
- flexible CDR based distance metricsβ59Updated 8 months ago
- Inference of TCR motifsβ30Updated last month
- β38Updated 4 years ago
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TCβ¦β25Updated 2 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipelineβ45Updated last year
- R package for the analysis of single-cell immune repertoiresβ42Updated 2 months ago
- β51Updated 5 months ago
- β29Updated 4 months ago
- β47Updated 2 years ago
- β18Updated 3 years ago
- R implementation of GLIPH (Grouping of Lymphocyte Interactions by Paratope Hotspots), an algorithm developed by Glanville et al to identiβ¦β19Updated 2 years ago
- This repository contains our CellTag workflow, as deployed in our 2018 Biddy et al., Nature paper.β32Updated 10 months ago
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)β21Updated 2 years ago
- code repository for Lagattuta et al. "Repertoire analyses reveal T cell receptor sequence features that influence T cell fate." Nat. Imm.β¦β12Updated 2 months ago
- Gene group activity utility functions for Scanpyβ72Updated 4 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3β41Updated last year
- β22Updated 5 months ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactionsβ34Updated 4 years ago
- Repo for website and other code for mouse sci-ATAC-seq projectβ28Updated 4 years ago
- Mapping the Functional Landscape of TCR Repertoireβ34Updated 3 years ago
- QBRC Neoantigen calling pipeline with CSiN calculation embeddedβ24Updated 3 years ago
- TCRGP, a novel Gaussian process method that can predict if TCRs recognize certain epitopes. This method can utilize different CDR sequencβ¦β30Updated 2 years ago
- Using BCR and expression for sequence embeddingβ21Updated last week
- An ultra-sensitive and precise tool for characterizing T cell CDR3 sequences in TCR-seq and RNA-seq data.β21Updated last year
- Tools for sgRNA calling in direct capture Perturb-seq dataβ32Updated last year
- ConsensusTME Gene Sets and R Scriptβ39Updated 10 months ago
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCsβ41Updated 2 years ago
- Code repository for the snRNA-seq cross-tissue atlas projectβ20Updated 3 years ago