quadbio / organoid_regulomesLinks
Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids
☆29Updated 2 years ago
Alternatives and similar repositories for organoid_regulomes
Users that are interested in organoid_regulomes are comparing it to the libraries listed below
Sorting:
- Code to go along with https://doi.org/10.1016/j.cell.2022.09.010☆21Updated 3 years ago
- Computational pipeline to process EasySci-RNA data.☆21Updated last year
- ☆20Updated last month
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆36Updated 2 years ago
- ☆58Updated last year
- ☆22Updated 2 years ago
- Gene Set + S2G strategy annotations analyzed for disease architecture☆53Updated 2 years ago
- Lung cancer 10X analysis☆11Updated 4 years ago
- ☆18Updated 2 years ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆40Updated 11 months ago
- Code, data and analysis for moslin.☆14Updated 10 months ago
- ☆56Updated last year
- Python code for cross-condition label refinement in single-cell data with HiDDEN☆13Updated 11 months ago
- A record of the analysis pipelines used to create the HTAPP data☆33Updated 4 months ago
- analysis script for GBM single cell RNA seq data☆18Updated 4 years ago
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆13Updated 2 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆38Updated 4 years ago
- Integrating temporal gene expression modalities for trajectory inference and disease prediction☆10Updated 2 years ago
- Landscape Single Cell Entropy☆20Updated 5 years ago
- Spatiotemporal single-cell RNA sequencing of developing hearts reveals interplay between cellular differentiation and morphogenesis☆13Updated last year
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆27Updated 4 years ago
- Independent Component Analysis decipher functional modules for better cell clustering and annotation☆16Updated 3 years ago
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆33Updated last year
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- a simple R data package for curated cancer pathway-specific gene lists☆12Updated 5 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆43Updated last week
- Spatial transcriptomics of heart tissue☆22Updated 3 years ago
- ☆13Updated last year
- identifying disease critical cell types and programs from single cell RNAseq☆57Updated 3 years ago
- Ordering gene-expression and functional events in single-cell experiments☆22Updated last year