Alternatives and similar repositories for organoid_regulomes

Users that are interested in organoid_regulomes are comparing it to the libraries listed below

• soumelis-lab / ICELLNET
  ☆20Updated 2 months ago
• dyxmvp / Spatial_ATAC-seq
  ☆23Updated 2 years ago
• CostaLab / scMEGA
  scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference
  ☆40Updated last year
• KChen-lab / bindSC
  Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…
  ☆36Updated 2 years ago
• AmandaKedaigle / OrganoidAtlas
  Code to go along with https://doi.org/10.1016/j.cell.2022.09.010
  ☆21Updated 3 years ago
• LungCellAtlas / scRNAseq_pipelines
  Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas
  ☆38Updated 4 years ago
• gabrielakinker / CCLE_heterogeneity
  ☆58Updated last year
• madhavmantri / chicken_heart
  Spatiotemporal single-cell RNA sequencing of developing hearts reveals interplay between cellular differentiation and morphogenesis
  ☆13Updated last year
• JunyueCaoLab / EasySci
  Computational pipeline to process EasySci-RNA data.
  ☆21Updated last year
• parveendabas / GBMatlas
  ☆18Updated 3 years ago
• ding-lab / PanCan_snATAC_publication
  ☆19Updated last year
• SGDDNB / GeneSwitches
  Ordering gene-expression and functional events in single-cell experiments
  ☆24Updated last year
• hsmaan / Iniquitate
  Analysis of imbalanced data and its impacts in a scRNA-seq integration setting
  ☆30Updated 6 months ago
• MarioniLab / StabMap
  Mosaic single cell data integration using non-overlapping features
  ☆37Updated 3 years ago
• Jiaxin-Fan / MuSiC2
  cell type deconvolution for multi-condition bulk RNA-seq data
  ☆28Updated 3 years ago
• kkdey / GSSG
  Gene Set + S2G strategy annotations analyzed for disease architecture
  ☆55Updated 2 years ago
• linnarsson-lab / cytograph2
  ☆15Updated 2 years ago
• zhang-bin-98 / A-spatial-transcriptome-landscape-of-mouse-aging
  ☆14Updated 11 months ago
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆43Updated last month
• Winnie09 / Lamian
  ☆57Updated last month
• JEFworks-Lab / veloviz
  RNA-velocity informed embeddings for visualizing cellular trajectories
  ☆45Updated 3 years ago
• klarman-cell-observatory / HTAPP-Pipelines
  A record of the analysis pipelines used to create the HTAPP data
  ☆33Updated 5 months ago
• WWXkenmo / ICAnet
  Independent Component Analysis decipher functional modules for better cell clustering and annotation
  ☆17Updated 3 years ago
• jiang-junyao / IReNA
  R package IReNA
  ☆28Updated 10 months ago
• ChenWeiyan / LandSCENT
  Landscape Single Cell Entropy
  ☆20Updated 5 years ago
• jbergenstrahle / STUtility
  ☆53Updated 2 years ago
• miccec / GBMstates
  Scripts from the GBM cellular states paper
  ☆19Updated 4 years ago
• LuChenLab / inferCC
  Lung cancer 10X analysis
  ☆11Updated 4 years ago
• JinmiaoChenLab / FastIntegration
  FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis
  ☆23Updated 11 months ago
• SunXQlab / scMLnet
  Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks
  ☆27Updated 4 years ago