quadbio / organoid_regulomesLinks
Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids
☆28Updated last year
Alternatives and similar repositories for organoid_regulomes
Users that are interested in organoid_regulomes are comparing it to the libraries listed below
Sorting:
- Code to go along with https://doi.org/10.1016/j.cell.2022.09.010☆21Updated 3 years ago
- analysis script for GBM single cell RNA seq data☆18Updated 4 years ago
- ☆10Updated 2 years ago
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆33Updated 3 years ago
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆32Updated last year
- Ordering gene-expression and functional events in single-cell experiments☆22Updated last year
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 6 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆43Updated 3 weeks ago
- ☆22Updated 2 years ago
- Lung cancer 10X analysis☆11Updated 4 years ago
- Constructing gene regulatory networks by integrating scRNA-seq and scATAC-seq data☆12Updated 3 years ago
- R package that performs sparse factor analysis and differential gene expression discovery simultaneously on single-cell CRISPR screening …☆20Updated last year
- ☆9Updated 11 months ago
- code for data processing and visualisation associated with the stromal subclasses manuscript☆11Updated 4 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆52Updated 3 weeks ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 7 months ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 3 months ago
- a simple R data package for curated cancer pathway-specific gene lists☆10Updated 5 years ago
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆28Updated 5 months ago
- ☆18Updated 10 months ago
- Single-Cell Inference of Class Switch Recombination☆19Updated 2 months ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆26Updated 3 years ago
- ☆20Updated last year
- CellRank's reproducibility repository.☆15Updated 3 years ago
- Independent Component Analysis decipher functional modules for better cell clustering and annotation☆15Updated 3 years ago
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆35Updated last year
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆26Updated 3 years ago
- Code for single-cell eQTL analysis of memory T cell data in Nathan, et al. bioRxiv (2021)☆19Updated last year
- Computational pipeline to process EasySci-RNA data.☆20Updated last year
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆37Updated 4 years ago