Hoohm / CITE-seq-CountLinks
A tool that allows to get UMI counts from a single cell protein assay
☆86Updated 7 months ago
Alternatives and similar repositories for CITE-seq-Count
Users that are interested in CITE-seq-Count are comparing it to the libraries listed below
Sorting:
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 5 years ago
- R implementation of MULTI-seq sample classification workflow☆64Updated 2 years ago
- ☆74Updated 2 years ago
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆95Updated 3 years ago
- Tools for single-cell data processing☆128Updated last year
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆81Updated 3 years ago
- R package for Pathway RespOnsive GENe activity inference☆111Updated 2 years ago
- Data and analysis scripts for our Embryo Timecourse paper.☆69Updated 5 years ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆86Updated this week
- Metacell - Single-cell mRNA Analysis☆117Updated 10 months ago
- AUCell: score single cells with gene regulatory networks☆174Updated last year
- Single Cell Cluster Evaluation☆98Updated 4 years ago
- Analysis of cell-cell communication at single-cell resolution☆105Updated last year
- Implements *CellAnnotator (aka *CAT/starCAT), annotating scRNA-Seq with predefined gene expression programs☆85Updated 3 weeks ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆131Updated 4 months ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆77Updated 2 years ago
- Publication Page for Satpathy*, Granja* et al 2019☆95Updated 5 years ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated 2 years ago
- ☆44Updated last week
- Detect doublets in single-cell RNA-seq data☆86Updated 6 years ago
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- ☆46Updated 3 years ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆40Updated 10 months ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆58Updated 4 years ago
- ☆63Updated 5 years ago
- Publication Page for MPAL Paper 2019☆83Updated 5 years ago
- ☆59Updated last year
- scRNA-seq cell type identification☆43Updated 6 years ago
- Direct estimation of mean and covariance from single cell RNA seq experiments☆123Updated 7 months ago
- Clone of the Bioconductor repository for the DropletUtils package.☆63Updated 3 months ago