Hoohm / CITE-seq-CountLinks
A tool that allows to get UMI counts from a single cell protein assay
☆85Updated 5 months ago
Alternatives and similar repositories for CITE-seq-Count
Users that are interested in CITE-seq-Count are comparing it to the libraries listed below
Sorting:
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 4 years ago
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆92Updated 3 years ago
- Tools for single-cell data processing☆127Updated last year
- R implementation of MULTI-seq sample classification workflow☆64Updated last year
- Data and analysis scripts for our Embryo Timecourse paper.☆69Updated 5 years ago
- ☆73Updated 2 years ago
- R package for Pathway RespOnsive GENe activity inference☆108Updated 2 years ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated 2 years ago
- Single Cell Cluster Evaluation☆97Updated 4 years ago
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆124Updated 2 months ago
- ☆47Updated 3 years ago
- Detect doublets in single-cell RNA-seq data☆86Updated 6 years ago
- AUCell: score single cells with gene regulatory networks☆169Updated last year
- Publication Page for Satpathy*, Granja* et al 2019☆95Updated 5 years ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated last year
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆81Updated 3 years ago
- Single-Cell Clustering Assessment Framework☆105Updated last year
- Efficient and precise single-cell reference atlas mapping with Symphony☆110Updated 2 years ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆85Updated last year
- Analysis of cell-cell communication at single-cell resolution☆104Updated last year
- Pipelines for the analysis of 10x single-cell RNA-sequencing data☆58Updated 2 years ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆39Updated 8 months ago
- This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources…☆73Updated 7 years ago
- R package for semi-supervised single-cell data integration☆90Updated last month
- ☆63Updated 5 years ago
- Mouse cell atlas☆61Updated 5 years ago
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 4 years ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆97Updated 2 years ago
- ☆70Updated last year