A tool that allows to get UMI counts from a single cell protein assay
☆87Apr 23, 2025Updated last year
Alternatives and similar repositories for CITE-seq-Count
Users that are interested in CITE-seq-Count are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- kallisto index tag extractor☆20Jul 6, 2019Updated 6 years ago
- This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.☆21Oct 19, 2022Updated 3 years ago
- RNA velocity estimation in R☆197Sep 14, 2023Updated 2 years ago
- Clone of the Bioconductor repository for the SingleR package.☆202Apr 8, 2026Updated 3 weeks ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆429Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Single Cell Epigenome-based Inference of Activity☆19Sep 27, 2023Updated 2 years ago
- R implementation of MULTI-seq sample classification workflow☆66Nov 22, 2023Updated 2 years ago
- ☆12Mar 18, 2026Updated last month
- AUCell: score single cells with gene regulatory networks☆191Mar 9, 2024Updated 2 years ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Nov 6, 2021Updated 4 years ago
- Probabilistic single-cell pseudotime with Edward+Tensorflow☆12Oct 5, 2017Updated 8 years ago
- Statistical approach for removing unwanted variation from multiple single-cell datasets☆71Apr 12, 2024Updated 2 years ago
- R package for detecting doublets in single-cell RNA sequencing data☆545Mar 21, 2025Updated last year
- Single-cell Case Control Analysis☆56Feb 26, 2026Updated 2 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Reference mapping for single-cell genomics☆404Mar 21, 2026Updated last month
- R package for integrating and analyzing multiple single-cell datasets☆428Feb 4, 2026Updated 2 months ago
- Code associated with MIX-seq manuscript☆15Aug 26, 2020Updated 5 years ago
- ☆16May 25, 2021Updated 4 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆42Feb 8, 2023Updated 3 years ago
- Single-cell Transcriptome and Regulome Analysis Pipeline☆309Mar 6, 2023Updated 3 years ago
- R package to visualize gene expression data based on weighted kernel density estimation☆112Feb 6, 2026Updated 2 months ago
- Analysis of cell-cell communication at single-cell resolution☆107Sep 10, 2024Updated last year
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆48Jul 20, 2022Updated 3 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Clustering scRNAseq by genotypes☆204Apr 14, 2026Updated 2 weeks ago
- ScaleBio Single-cell RNA Nextflow Workflow☆40Jul 2, 2025Updated 10 months ago
- cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data☆146Apr 5, 2024Updated 2 years ago
- Fast, sensitive and accurate integration of single-cell data with Harmony☆643Apr 21, 2026Updated last week
- ☆11Apr 6, 2022Updated 4 years ago
- A tool for semi-automatic cell type classification☆473Mar 21, 2026Updated last month
- Tools and methods for analysis of single cell assay data in R☆262Oct 17, 2025Updated 6 months ago
- Inferring CNV from Single-Cell RNA-Seq☆663Nov 14, 2025Updated 5 months ago
- Single-cell RNA-seq Gene Expression Recovery☆114Nov 28, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Bioconductor2017 workshop - Analysis of single-cell RNA-seq data: Normalization, dimensionality reduction, clustering, and lineage infere…☆11Aug 4, 2017Updated 8 years ago
- ☆14Mar 28, 2025Updated last year
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆39Nov 16, 2021Updated 4 years ago
- TRAjectory-based Differential Expression analysis for SEQuencing data☆295Jun 17, 2025Updated 10 months ago
- A package to help convert different single-cell data formats to each other☆465Feb 20, 2026Updated 2 months ago
- An R package to implement Differential Gene Set Enrichment Analysis (DGSEA): A statistical approach to quantify the relative enrichment o…☆15Apr 12, 2023Updated 3 years ago
- Dimensionality reduction for single cell RNA-seq data☆36Feb 9, 2020Updated 6 years ago