Hoohm / CITE-seq-CountLinks
A tool that allows to get UMI counts from a single cell protein assay
☆82Updated 4 months ago
Alternatives and similar repositories for CITE-seq-Count
Users that are interested in CITE-seq-Count are comparing it to the libraries listed below
Sorting:
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 4 years ago
- R package for Pathway RespOnsive GENe activity inference☆107Updated 2 years ago
- Data and analysis scripts for our Embryo Timecourse paper.☆69Updated 5 years ago
- R implementation of MULTI-seq sample classification workflow☆64Updated last year
- Analysis of cell-cell communication at single-cell resolution☆104Updated 11 months ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated last year
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆92Updated 3 years ago
- Tools for single-cell data processing☆126Updated last year
- R package for semi-supervised single-cell data integration☆87Updated 2 weeks ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆39Updated 7 months ago
- ☆70Updated 2 years ago
- Publication Page for Satpathy*, Granja* et al 2019☆95Updated 5 years ago
- Efficient and precise single-cell reference atlas mapping with Symphony☆106Updated 2 years ago
- A tool for removing doublets from single-cell RNA-seq data☆74Updated 4 years ago
- AUCell: score single cells with gene regulatory networks☆164Updated last year
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆85Updated 11 months ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆120Updated last month
- Single Cell Cluster Evaluation☆96Updated 4 years ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated 2 years ago
- ☆47Updated 3 years ago
- R implementation of GLIPH (Grouping of Lymphocyte Interactions by Paratope Hotspots), an algorithm developed by Glanville et al to identi…☆23Updated 2 years ago
- Metacell - Single-cell mRNA Analysis☆116Updated 7 months ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆79Updated 3 years ago
- Single-Cell Clustering Assessment Framework☆105Updated last year
- Detect doublets in single-cell RNA-seq data☆85Updated 6 years ago
- R package to access DoRothEA's regulons☆149Updated last year
- ☆70Updated last year
- scWGCNA☆61Updated 2 years ago
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- ☆59Updated 11 months ago