korsunskylab / tessera
☆12Updated 3 weeks ago
Alternatives and similar repositories for tessera:
Users that are interested in tessera are comparing it to the libraries listed below
- Interactive visualisation of CellphoneDB results☆9Updated 2 months ago
- Paired Insertion Counting for snATAC-seq data☆17Updated 7 months ago
- A repository for benchmarking spatial deconvolution and mapping tools☆33Updated 2 months ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆19Updated 2 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆39Updated last year
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆38Updated 2 years ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆31Updated last month
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 5 months ago
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆37Updated last year
- ☆36Updated 6 months ago
- ☆42Updated 5 months ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆21Updated last year
- .h5mu files interface for Seurat☆28Updated last year
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆17Updated 5 months ago
- ☆21Updated 2 years ago
- Inferring gene co-expression networks from single cell gene expression data☆24Updated 2 years ago
- ☆29Updated last year
- scOpen: single-cell open chromatin analysis via NMF modelling☆26Updated 2 years ago
- ☆35Updated 3 weeks ago
- Information-based dimensionality reduction☆29Updated 3 months ago
- The algorithm, supervised Capacity Mapping (supCPM), to visualize scRNA-seq data☆7Updated 7 months ago
- An r package that works as a wrapper to homologene☆43Updated last year
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆35Updated 3 years ago
- Code repository for the snRNA-seq cross-tissue atlas project☆20Updated 3 years ago
- Implements *CellAnnotator (aka *CAT/starCAT), annotating scRNA-Seq with predefined gene expression programs☆21Updated last month
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated 9 months ago
- An R package for visualising cell-cell interactions☆43Updated 7 months ago
- RNA velocity validation☆23Updated 3 years ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year