korsunskylab / tesseraView external linksLinks
☆19Feb 9, 2026Updated last week
Alternatives and similar repositories for tessera
Users that are interested in tessera are comparing it to the libraries listed below
Sorting:
- Python code for cross-condition label refinement in single-cell data with HiDDEN☆14Sep 21, 2024Updated last year
- Genotype-Neighborhood Associations: A tool for identifying genetic variant associations to the abundance of cell states in single-cell d…☆16Oct 5, 2024Updated last year
- scTM: A package for topic modelling in transcriptomics data☆24May 1, 2024Updated last year
- ☆41Jun 24, 2025Updated 7 months ago
- Detecting and dissecting anomalous anatomic regions in spatial transcriptomics with STANDS☆11Dec 27, 2024Updated last year
- Interactive visualisation of CellphoneDB results☆11Jan 15, 2025Updated last year
- Multi-slice Spatial Transcriptome Domain Analysis.☆13Dec 13, 2024Updated last year
- ☆18Feb 5, 2025Updated last year
- A repository for benchmarking spatial deconvolution and mapping tools☆36May 13, 2025Updated 9 months ago
- ☆18May 8, 2023Updated 2 years ago
- ☆11May 30, 2023Updated 2 years ago
- Multivariate stochastic modeling for transcriptional dynamics with cell-specific latent time using SDEvelo☆19Jan 28, 2025Updated last year
- Fast algorithms for GLM-PCA.☆14Mar 12, 2025Updated 11 months ago
- SIMBA: SIngle-cell eMBedding Along with features☆66Oct 16, 2024Updated last year
- A python package for Multiomics and Ecological Spatial Analysis (MESA)☆24Apr 8, 2025Updated 10 months ago
- Implementation of MaSigPro for scRNA-Seq Data☆18Jul 31, 2024Updated last year
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆17Apr 20, 2024Updated last year
- Python package to interactively annotate histological images within a jupyter notebook☆18Oct 20, 2025Updated 3 months ago
- ☆19Jan 21, 2026Updated 3 weeks ago
- scVI extension for unspliced RNA☆16May 18, 2025Updated 8 months ago
- Package for the analysis of Transcripts outside segmented cells in ST data☆26Feb 9, 2026Updated last week
- Learning meaningful representations of genes☆21Jul 7, 2025Updated 7 months ago
- SPatial INtegration of spatially resolved transcriptomics datasets☆18Mar 14, 2025Updated 11 months ago
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆51Nov 20, 2025Updated 2 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆45Sep 3, 2025Updated 5 months ago
- Paired Insertion Counting for snATAC-seq data☆19May 12, 2025Updated 9 months ago
- Framework for Unified Single-Cell Analysis (FUSCA) is a software package for single-cell data analysis developed in R. At the moment, it …☆21Feb 14, 2023Updated 3 years ago
- This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.☆21Oct 19, 2022Updated 3 years ago
- A light-weight HTML lab notebook generator☆18Jun 16, 2023Updated 2 years ago
- ☆52Oct 9, 2025Updated 4 months ago
- CellLENS: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data☆34Jul 24, 2025Updated 6 months ago
- Single cell proteomics data processing☆30Feb 9, 2026Updated last week
- ☆25Oct 25, 2023Updated 2 years ago
- ☆21Jul 7, 2025Updated 7 months ago
- List of Spatial Transcriptomics related Tools organized per category☆105Feb 3, 2026Updated 2 weeks ago
- Tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP).☆24Sep 29, 2025Updated 4 months ago
- Contextual AI models for single-cell protein biology☆96Feb 14, 2025Updated last year
- GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data☆70Dec 1, 2025Updated 2 months ago
- Multi-resolution Variational Inference☆22Jan 19, 2026Updated 3 weeks ago