NATMI: Network Analysis Toolkit for the Multicellular Interactions
☆35Apr 13, 2021Updated 4 years ago
Alternatives and similar repositories for NATMI
Users that are interested in NATMI are comparing it to the libraries listed below
Sorting:
- Efficiently compute robust markers across single-cell datasets☆12Apr 21, 2021Updated 4 years ago
- scMatch: a single-cell gene expression profile annotation tool using reference datasets☆21Aug 11, 2020Updated 5 years ago
- ☆12Apr 16, 2021Updated 4 years ago
- LIANA: a LIgand-receptor ANalysis frAmework☆234Aug 7, 2024Updated last year
- Combined clonality and transcriptome scRNAseq clustering method☆11Dec 3, 2022Updated 3 years ago
- 10x single cell RNA-seq data from the developing mouse retina☆16Mar 11, 2021Updated 5 years ago
- Data-driven signal detection for unbiased scRNA-seq data analysis☆22Jan 22, 2026Updated 2 months ago
- Automated cell filtering for single-cell RNA sequencing data☆26Nov 14, 2023Updated 2 years ago
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆150Jan 20, 2023Updated 3 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆17Dec 19, 2024Updated last year
- R package of CSOmap(developing☆13Mar 22, 2022Updated 4 years ago
- Causal inference, differential expression, and co-expression for scRNA-seq☆19Dec 19, 2025Updated 3 months ago
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆88Oct 6, 2023Updated 2 years ago
- Gene Set Scoring on the Nearest Neighbor Graph (gssnng) for Single Cell RNA-seq (scRNA-seq) using AnnData h5ad files.☆12Oct 1, 2024Updated last year
- Computational identification of targets for CAR-T cell therapy in AML☆21Dec 25, 2022Updated 3 years ago
- R package for Bioconductor submission☆39Dec 8, 2022Updated 3 years ago
- repo to explore spatial data in R/Bioconductor and Python☆12Dec 3, 2019Updated 6 years ago
- Gene set enrichment analysis for single-cell RNAseq data☆31Feb 17, 2023Updated 3 years ago
- Dynamical systems methods for RNA velocity analysis☆24May 19, 2021Updated 4 years ago
- Standalone shiny server container for viewing CellChat object☆13Feb 18, 2021Updated 5 years ago
- Analysis of cell-cell communication at single-cell resolution☆106Sep 10, 2024Updated last year
- SCelVis - web-based visualization of single-cell data. Demo☆22Mar 20, 2024Updated 2 years ago
- This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.☆21Oct 19, 2022Updated 3 years ago
- ☆11Aug 21, 2024Updated last year
- Scripts used for the Differential NicheNet analyses in the Liver Atlas paper Guilliams et al., Cell 2022☆10Jan 12, 2022Updated 4 years ago
- Interactive software tool for the assignment of cell types in single-cell studies.☆33Apr 14, 2023Updated 2 years ago
- A robust and accurate cell type classifier for single cell RNA-seq data☆17Mar 15, 2023Updated 3 years ago
- Brendan's skeleton scRNAseq workflow using scran, Seurat, and scClustViz☆11Apr 22, 2020Updated 5 years ago
- 🧬 o r t h o g e n e 🧬✨✨✨✨✨✨✨ Interspecies gene mapping✨✨✨✨✨ 🦠 🔁 🌱 🔁 🌳 🔁 🍎 🔁 🍊 🔁 🪱 🔁 🪰 🔁 🐟 🔁 🦎 🔁 🐓 🔁 🦇 🔁 🐄 🔁 �…☆52Jan 25, 2026Updated last month
- a simple R data package for curated cancer pathway-specific gene lists☆13Mar 31, 2020Updated 5 years ago
- scover☆24Nov 3, 2023Updated 2 years ago
- R package for robust clustering of single cell RNA sequencing data☆36Mar 25, 2024Updated last year
- easy access to benchmark datasets☆50Aug 17, 2018Updated 7 years ago
- Quasilinear data representations for single-cell omics data analysis☆43May 4, 2023Updated 2 years ago
- R package for Flexible dot plots☆29Jun 19, 2022Updated 3 years ago
- R package containing the Cerebro application.☆40Nov 21, 2021Updated 4 years ago
- Multi-study integration of cellular trajectories☆19Jun 1, 2020Updated 5 years ago
- A computational method for inferring cell-cell communication signaling networks using single-cell transcriptomics data.☆21Dec 29, 2025Updated 2 months ago
- ☆25Aug 5, 2025Updated 7 months ago