pinellolab / STREAMLinks
STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of single-cell data
☆179Updated 4 years ago
Alternatives and similar repositories for STREAM
Users that are interested in STREAM are comparing it to the libraries listed below
Sorting:
- cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data☆143Updated last year
- SingleCellNet: classify single cells across species and platforms☆140Updated 2 years ago
- Detect doublets in single-cell RNA-seq data☆86Updated 6 years ago
- Single-Cell Clustering Assessment Framework☆107Updated 2 years ago
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆169Updated 2 years ago
- A tool that allows to get UMI counts from a single cell protein assay☆87Updated 9 months ago
- chromatin Variability Across Regions (of the genome!)☆185Updated last year
- Tools for single-cell data processing☆132Updated last year
- R package to access DoRothEA's regulons☆154Updated last year
- A tool for unsupervised projection of single cell RNA-seq data☆96Updated 5 years ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆80Updated 2 years ago
- Scanpy use cases.☆90Updated 5 years ago
- Automated cell type classification☆116Updated last year
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆95Updated 3 years ago
- R script for the covid balf data analysis☆65Updated 5 years ago
- Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey a…☆161Updated last week
- A tool for the unsupervised clustering of cells from single cell RNA-Seq experiments☆129Updated 4 years ago
- ☆131Updated 2 years ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆81Updated last year
- Automated, probabilistic assignment of cell types in scRNA-seq data☆210Updated 3 years ago
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆119Updated 3 years ago
- ☆85Updated 5 years ago
- Interactively analyze single cell genomic data☆184Updated 3 weeks ago
- R package for Pathway RespOnsive GENe activity inference☆114Updated 3 years ago
- Clustering scRNAseq by genotypes☆193Updated 2 months ago
- Doublet detection in single-cell RNA-seq data.☆97Updated last year
- Code for evaluation of differential expression methods in single-cell RNA-seq data☆111Updated 5 years ago
- Convert between AnnData and SingleCellExperiment☆143Updated this week
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆114Updated last year
- SCSA: cell type annotation for single-cell RNA-seq data☆94Updated 2 years ago