R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)
☆12Aug 17, 2023Updated 2 years ago
Alternatives and similar repositories for MOFAcellulaR
Users that are interested in MOFAcellulaR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Scalable, downsampling-free automated cell-population discovery, feature engineering, classification and visualization of single-cell (mo…☆12Aug 30, 2021Updated 4 years ago
- ESICCC: A systematic computational framework for evaluation, selection and integration of cell-cell communication inference methods☆13Jan 10, 2024Updated 2 years ago
- ImageJ macro for microglia morphology analysis☆18Apr 3, 2026Updated last week
- Custom codes accompanying single cell spatial transcriptomic study on the healthy human lung☆14Dec 27, 2023Updated 2 years ago
- Python package for the semi-supervised analysis of multi-omics data☆13Oct 15, 2025Updated 6 months ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Multi-resolution Variational Inference☆23Mar 16, 2026Updated 3 weeks ago
- Single Cell Oriented Reconstruction of PANDA-based Individually Optimized Networks☆27Apr 3, 2026Updated last week
- ☆16Jul 9, 2024Updated last year
- Vaeda method for computational doublet annotation☆19Feb 1, 2026Updated 2 months ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆41Nov 18, 2025Updated 4 months ago
- Code used for muti cellular factor analysis☆16Dec 13, 2023Updated 2 years ago
- Learning meaningful representations of genes☆21Jul 7, 2025Updated 9 months ago
- Generate masks for scRNA-seq clusters on t-SNE or UMAP plots☆45Updated this week
- R package: determining cutoff values from bimodal data☆11Mar 17, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆13Dec 14, 2023Updated 2 years ago
- Extension of SpatialExperiment with sf☆57Apr 7, 2026Updated last week
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆14Oct 21, 2024Updated last year
- An R/Bioconductor package to identify higher-order molecular phenotypes☆19Jan 15, 2024Updated 2 years ago
- Analysis of cell-cell communication at single-cell resolution☆106Sep 10, 2024Updated last year
- NHC: A computational approach to detect physiological homogeneity in the midst of genetic heterogeneity☆12Feb 25, 2026Updated last month
- An R package to implement Differential Gene Set Enrichment Analysis (DGSEA): A statistical approach to quantify the relative enrichment o…☆14Apr 12, 2023Updated 3 years ago
- Framework for Unified Single-Cell Analysis (FUSCA) is a software package for single-cell data analysis developed in R. At the moment, it …☆22Feb 14, 2023Updated 3 years ago
- ☆21Mar 2, 2026Updated last month
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆16Sep 1, 2023Updated 2 years ago
- ☆24Mar 3, 2026Updated last month
- Differential Expression with Capture Efficiency adjustmeNT☆15Jan 3, 2023Updated 3 years ago
- Code and example of the D-SPIN framework☆25Mar 12, 2026Updated last month
- A re-analysis of the [Single-cell transcriptomic analysis of Alzheimer’s disease](https://www.nature.com/articles/s41586-019-1195-2) usin…☆14Dec 5, 2023Updated 2 years ago
- This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.☆21Oct 19, 2022Updated 3 years ago
- Differential expression (DE); gene set Enrichment Analysis (GSEA); single cell RNAseq studies (scRNAseq)☆34Oct 6, 2022Updated 3 years ago
- R package to visualize gene expression data based on weighted kernel density estimation☆112Feb 6, 2026Updated 2 months ago
- An R package for handling and analysing imaging mass cytometry data☆31Mar 30, 2026Updated 2 weeks ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- The Single-Cell Pathology Landscape of Breast Cancer☆27Jan 14, 2020Updated 6 years ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆79Mar 28, 2026Updated 2 weeks ago
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆295Updated this week
- ☆99Updated this week
- Single-Cell Inference of Class Switch Recombination☆22Feb 11, 2026Updated 2 months ago
- R package for single cell and other data analysis using diffusion maps☆97Nov 9, 2025Updated 5 months ago
- Identification of spatial homogeneous regions☆21Oct 6, 2025Updated 6 months ago