R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)
☆15Aug 17, 2023Updated 2 years ago
Alternatives and similar repositories for MOFAcellulaR
Users that are interested in MOFAcellulaR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Scalable, downsampling-free automated cell-population discovery, feature engineering, classification and visualization of single-cell (mo…☆12Aug 30, 2021Updated 4 years ago
- ESICCC: A systematic computational framework for evaluation, selection and integration of cell-cell communication inference methods☆13Jan 10, 2024Updated 2 years ago
- Custom codes accompanying single cell spatial transcriptomic study on the healthy human lung☆15Dec 27, 2023Updated 2 years ago
- R package: determining cutoff values from bimodal data☆11Mar 17, 2024Updated 2 years ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆42Nov 18, 2025Updated 8 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Multi-resolution Variational Inference☆23Jul 13, 2026Updated last week
- ImageJ macro for microglia morphology analysis☆18Jun 10, 2026Updated last month
- Code used for muti cellular factor analysis☆18Dec 13, 2023Updated 2 years ago
- Single Cell Oriented Reconstruction of PANDA-based Individually Optimized Networks☆28Apr 3, 2026Updated 3 months ago
- ☆16Jul 9, 2024Updated 2 years ago
- Automated ingestion and conversion of various single-cell data formats, within and across species☆16Jan 26, 2026Updated 5 months ago
- ☆16Sep 1, 2023Updated 2 years ago
- ☆13Dec 14, 2023Updated 2 years ago
- An R/Bioconductor package to identify higher-order molecular phenotypes☆19Jan 15, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆14Oct 21, 2024Updated last year
- NHC: A computational approach to detect physiological homogeneity in the midst of genetic heterogeneity☆12Feb 25, 2026Updated 5 months ago
- ☆19Jul 12, 2026Updated last week
- Extension of SpatialExperiment with sf☆57May 6, 2026Updated 2 months ago
- Kinship In Mixed Model Analysis of RNA-seq☆16Apr 14, 2025Updated last year
- An R package to implement Differential Gene Set Enrichment Analysis (DGSEA): A statistical approach to quantify the relative enrichment o…☆15Apr 12, 2023Updated 3 years ago
- ☆21Mar 2, 2026Updated 4 months ago
- Differential Expression with Capture Efficiency adjustmeNT☆15Jan 3, 2023Updated 3 years ago
- Analysis of cell-cell communication at single-cell resolution☆107Sep 10, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Differential expression (DE); gene set Enrichment Analysis (GSEA); single cell RNAseq studies (scRNAseq)☆34Oct 6, 2022Updated 3 years ago
- SenePy is a set of tools to score single-cells based on their expression of cell-specific senescence markers. Please see the following pu…☆59Jan 30, 2025Updated last year
- Stitch multiple Visium slides together☆17Oct 16, 2025Updated 9 months ago
- A re-analysis of the [Single-cell transcriptomic analysis of Alzheimer’s disease](https://www.nature.com/articles/s41586-019-1195-2) usin…☆14Dec 5, 2023Updated 2 years ago
- Bayesian Sparse Additive Perturbation Regression, code and simulations☆16Apr 29, 2025Updated last year
- Framework for Unified Single-Cell Analysis (FUSCA) is a software package for single-cell data analysis developed in R. At the moment, it …☆22Feb 14, 2023Updated 3 years ago
- Python package for the semi-supervised analysis of multi-omics data☆15Oct 15, 2025Updated 9 months ago
- This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.☆22Oct 19, 2022Updated 3 years ago
- Model-based Dimensionality Reduction for Single-cell RNA-seq with Generalized Bilinear Models☆17Jul 29, 2025Updated 11 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Single-cell Case Control Analysis☆59Feb 26, 2026Updated 4 months ago
- Learning meaningful representations of genes☆21Jul 7, 2025Updated last year
- The Single-Cell Pathology Landscape of Breast Cancer☆28Jan 14, 2020Updated 6 years ago
- Single-Cell Inference of Class Switch Recombination☆24Jun 19, 2026Updated last month
- Vaeda method for computational doublet annotation☆20Feb 1, 2026Updated 5 months ago
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆304Jun 30, 2026Updated 3 weeks ago
- Identification of spatial homogeneous regions☆21Oct 6, 2025Updated 9 months ago