ScialdoneLab / CIARALinks
CIARA (Cluster Independent Algorithm for the identification of markers of RAre cell types) is an R package that identifies potential markers of rare cell types looking at genes whose expression is confined in small regions of the expression space
☆16Updated last month
Alternatives and similar repositories for CIARA
Users that are interested in CIARA are comparing it to the libraries listed below
Sorting:
- ☆15Updated 2 weeks ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated last year
- R package to detect breakpoints and assign somies to scATAC-seq data☆42Updated 2 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated last year
- Calculate cluster similarity between clusters from different single cell datasets/batches/samples.☆25Updated last week
- Robust identification of perturbed cell types in single-cell RNA-seq data☆36Updated 2 months ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆31Updated 3 years ago
- ☆33Updated last year
- ☆15Updated last year
- ☆40Updated 5 months ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆32Updated 3 years ago
- ☆53Updated last year
- R package IReNA☆29Updated last year
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆28Updated last year
- Independent Component Analysis decipher functional modules for better cell clustering and annotation☆17Updated 3 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆81Updated 5 months ago
- scNOVA : Single-Cell Nucleosome Occupancy and genetic Variation Analysis☆11Updated 2 years ago
- R package of CSOmap(developing☆13Updated 3 years ago
- ☆39Updated 4 years ago
- interactive visualization of single-cell transcriptomes☆11Updated 2 years ago
- Ordering gene-expression and functional events in single-cell experiments☆29Updated last year
- This repository contains our CellTag workflow, as deployed in our 2018 Biddy et al., Nature paper.☆32Updated last year
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated last week
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆26Updated 11 months ago
- R tools for analysis and visualization of single-cell subclustering data☆17Updated 5 months ago
- Functional Inference of Gene Regulation☆51Updated last year
- Single cell RNA-seq analysis bundle☆37Updated 6 years ago
- Paired Insertion Counting for snATAC-seq data☆19Updated 8 months ago
- scWGCNA☆61Updated 3 years ago
- Cluster Identity Predictor (R package implementation)☆21Updated 3 years ago