CIARA (Cluster Independent Algorithm for the identification of markers of RAre cell types) is an R package that identifies potential markers of rare cell types looking at genes whose expression is confined in small regions of the expression space
☆18Jan 1, 2026Updated 9 months ago
Alternatives and similar repositories for CIARA
Users that are interested in CIARA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Implementation of entropy of mixing algorithm in python☆10Oct 19, 2022Updated 4 years ago
- ☆16Apr 8, 2026Updated 6 months ago
- An R package that integrates the installation, execution, and benchmark of cutting-edge computational doublet-detection methods.☆12Dec 4, 2022Updated 3 years ago
- An R package for multi-dimensional pathway enrichment analysis☆18Jan 8, 2026Updated 9 months ago
- R interface to the Pan-human Azimuth neural network for cell type annotation☆15Jul 29, 2026Updated 3 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Integrating temporal gene expression modalities for trajectory inference and disease prediction☆11Sep 20, 2022Updated 4 years ago
- Model-based Dimensionality Reduction for Single-cell RNA-seq with Generalized Bilinear Models☆17Jul 29, 2025Updated last year
- scOntoMatch is an R package which unifies ontology annotation of scRNA-seq datasets to make them comparable across studies☆11Oct 27, 2023Updated 3 years ago
- ☆23Sep 8, 2023Updated 3 years ago
- ☆22Jun 12, 2026Updated 4 months ago
- Learning meaningful representations of genes☆22Jul 7, 2025Updated last year
- Tool to parse fasterq/fastq dump outputs for SRA scRNAseq data☆19Mar 7, 2024Updated 2 years ago
- Querying cellular states and programs by learning representations of gene sets☆16Nov 2, 2025Updated 11 months ago
- A re-analysis of the [Single-cell transcriptomic analysis of Alzheimer’s disease](https://www.nature.com/articles/s41586-019-1195-2) usin…☆14Dec 5, 2023Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- A library for the deconvolution of bulk cell samples using single-cell RNA expression data.☆23Nov 3, 2021Updated 4 years ago
- ☆11Aug 21, 2024Updated 2 years ago
- Latent Embedding Multivariate Regression☆103Jul 29, 2026Updated 3 months ago
- Gene Set Scoring on the Nearest Neighbor Graph (gssnng) for Single Cell RNA-seq (scRNA-seq) using AnnData h5ad files.☆13Oct 1, 2024Updated 2 years ago
- Code to reproduce analyses and figures for Kamath et al., 2022☆13May 5, 2022Updated 4 years ago
- Differential quantification of alternative splicing events on spliced pangenome graphs☆16Jan 30, 2026Updated 9 months ago
- ☆13Apr 16, 2021Updated 5 years ago
- Some scripts for T-LGLL single cell RNA-seq project☆11Nov 19, 2021Updated 4 years ago
- ☆33Apr 12, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Cell Interaction by Multiplet Sequencing (CIM-Seq) uses computational deconvolution of RNA-seq data from partially dissociated tissue to …☆11Jan 20, 2022Updated 4 years ago
- Functional Inference of Gene Regulation☆56Jul 5, 2024Updated 2 years ago
- Simplified script for applying the t-SNE diff method on high parameter flow cytometry data☆10Oct 31, 2023Updated 3 years ago
- A C++ program that can tell statements to and ask a query from a first order logic based knowledge base. Inserting statements into the kn…☆12Mar 2, 2017Updated 9 years ago
- This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.☆24Oct 19, 2022Updated 4 years ago
- Identification of cell type-specific alternative splicing events using scASfind☆12Mar 23, 2024Updated 2 years ago
- scCellFie infers metabolic activities from single-cell and spatial transcriptomics and offers a variety of downstream analyses.☆65Oct 16, 2026Updated 2 weeks ago
- Scalable, downsampling-free automated cell-population discovery, feature engineering, classification and visualization of single-cell (mo…☆12Aug 30, 2021Updated 5 years ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆32Dec 22, 2022Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- clustering method for single-cell transcriptomics data☆11Oct 11, 2026Updated 3 weeks ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆44Nov 10, 2025Updated 11 months ago
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆56Oct 31, 2024Updated 2 years ago
- K-means clustering for large single-cell datasets☆13Feb 10, 2026Updated 8 months ago
- Non-negative Independent Factor Analysis for single cell RNA-seq☆12Feb 25, 2022Updated 4 years ago
- Vector representations of gene co-expression in single cell RNAseq.☆37Jun 7, 2026Updated 4 months ago
- A scalable method to infer fate specific gene regulatory network from single cell gene expression data☆10Jan 21, 2025Updated last year