Alternatives and similar repositories for CIARA:

Users that are interested in CIARA are comparing it to the libraries listed below

• veltenlab / CloneTracer
  This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…
  ☆25Updated 3 months ago
• UPSUTER / GEMLI
  ☆29Updated last week
• Teichlab / Genes2Genes
  Aligning gene expression trajectories of single-cell reference and query systems
  ☆54Updated 3 months ago
• HectorRDB / condiments
  Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression
  ☆26Updated last month
• caleblareau / maegatk
  Mitochondrial Alteration Enrichment and Genome Analysis Toolkit
  ☆19Updated last year
• cellatlas / cellatlas
  ☆16Updated 6 months ago
• morris-lab / CellTagR
  This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.
  ☆20Updated 2 years ago
• gxiaolab / scAllele
  ☆31Updated 9 months ago
• lkmklsmn / MitoTrace
  ☆15Updated 7 months ago
• wenweixiong / MARVEL
  ☆44Updated 5 months ago
• Morriseylab / scExtras
  ☆12Updated 6 months ago
• neurorestore / DE-analysis
  ☆37Updated 3 years ago
• Zhen-Miao / PICsnATAC
  Paired Insertion Counting for snATAC-seq data
  ☆17Updated 5 months ago
• omicsCore / scTyper
  scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data
  ☆28Updated 2 years ago
• bjstewart1 / kidney_sc_immune
  Repository for scRNAseq study of human kidneys
  ☆15Updated 5 years ago
• BMILAB / scAPAtrap
  ☆16Updated last year
• bcgsc / RNA-Scoop
  interactive visualization of single-cell transcriptomes
  ☆11Updated last year
• nghiavtr / SCmut
  ☆31Updated 5 years ago
• lusystemsbio / NetAct
  Network construction Algorithm
  ☆20Updated 4 months ago
• sjdlabgroup / Census
  Accurate, deep, fast, and fully-automated scRNA-seq cell-type annotation
  ☆11Updated last week
• haniffalab / scRNA-seq_analysis
  Single cell RNA-seq analysis bundle
  ☆34Updated 5 years ago
• Teichlab / snp2cell
  cell type specific, trait-associated gene regulation
  ☆18Updated last month
• ThomasJamesMitchell / deSCeRNAMut
  Method for de novo mutation calling from droplet based single cell RNA seq data
  ☆12Updated 3 years ago
• satijalab / PASTA
  ☆17Updated 5 months ago
• molgenis / scRNA-seq
  ☆18Updated 10 months ago
• atakanekiz / CIPR-Package
  Cluster Identity Predictor (R package implementation)
  ☆19Updated 2 years ago
• BradBalderson / Cytocipher
  Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…
  ☆33Updated last year
• PoolLab / ReferenceEnhancer
  ☆20Updated last year
• Jiaxin-Fan / MuSiC2
  cell type deconvolution for multi-condition bulk RNA-seq data
  ☆22Updated 2 years ago
• KlugerLab / DAseq
  ☆39Updated 3 years ago