CIARA (Cluster Independent Algorithm for the identification of markers of RAre cell types) is an R package that identifies potential markers of rare cell types looking at genes whose expression is confined in small regions of the expression space
☆18Jan 1, 2026Updated 9 months ago
Alternatives and similar repositories for CIARA
Users that are interested in CIARA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Implementation of entropy of mixing algorithm in python☆10Oct 19, 2022Updated 3 years ago
- ☆16Apr 8, 2026Updated 6 months ago
- ☆22Jun 12, 2026Updated 3 months ago
- Learning meaningful representations of genes☆21Jul 7, 2025Updated last year
- ☆11Aug 21, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Code to reproduce analyses and figures for Kamath et al., 2022☆13May 5, 2022Updated 4 years ago
- A re-analysis of the [Single-cell transcriptomic analysis of Alzheimer’s disease](https://www.nature.com/articles/s41586-019-1195-2) usin…☆14Dec 5, 2023Updated 2 years ago
- Gene Set Scoring on the Nearest Neighbor Graph (gssnng) for Single Cell RNA-seq (scRNA-seq) using AnnData h5ad files.☆12Oct 1, 2024Updated 2 years ago
- ☆13Apr 16, 2021Updated 5 years ago
- Python code for cross-condition label refinement in single-cell data with HiDDEN☆14Sep 21, 2024Updated 2 years ago
- Simplified script for applying the t-SNE diff method on high parameter flow cytometry data☆10Oct 31, 2023Updated 2 years ago
- A C++ program that can tell statements to and ask a query from a first order logic based knowledge base. Inserting statements into the kn…☆12Mar 2, 2017Updated 9 years ago
- Differential quantification of alternative splicing events on spliced pangenome graphs☆16Jan 30, 2026Updated 8 months ago
- Code for Task2Sim (CVPR'22)☆26Mar 23, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Vector representations of gene co-expression in single cell RNAseq.☆37Jun 7, 2026Updated 4 months ago
- Toolbox for single-cell data analysis on sample level☆28Updated this week
- Model-based Dimensionality Reduction for Single-cell RNA-seq with Generalized Bilinear Models☆17Jul 29, 2025Updated last year
- ☆23Sep 8, 2023Updated 3 years ago
- physics-informed neural network based method for solving single-cell population dynamics☆18Sep 19, 2026Updated 3 weeks ago
- Genotype-Neighborhood Associations: A tool for identifying genetic variant associations to the abundance of cell states in single-cell d…☆18Oct 5, 2024Updated 2 years ago
- A repository for benchmarking spatial deconvolution and mapping tools☆37May 13, 2025Updated last year
- Code to run the scHLApers pipeline for personalized single-cell HLA quantification☆19Jan 10, 2024Updated 2 years ago
- Functional Inference of Gene Regulation☆56Jul 5, 2024Updated 2 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆13May 13, 2026Updated 4 months ago
- scCellFie infers metabolic activities from single-cell and spatial transcriptomics and offers a variety of downstream analyses.☆64Sep 17, 2026Updated 3 weeks ago
- Tool to parse fasterq/fastq dump outputs for SRA scRNAseq data☆19Mar 7, 2024Updated 2 years ago
- scOntoMatch is an R package which unifies ontology annotation of scRNA-seq datasets to make them comparable across studies☆11Oct 27, 2023Updated 2 years ago
- Querying cellular states and programs by learning representations of gene sets☆16Nov 2, 2025Updated 11 months ago
- ☆12Jul 25, 2019Updated 7 years ago
- ☆17Jul 13, 2024Updated 2 years ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Jan 11, 2025Updated last year
- ☆22Mar 2, 2026Updated 7 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.☆24Oct 19, 2022Updated 3 years ago
- ☆39May 31, 2021Updated 5 years ago
- Automated cell filtering for single-cell RNA sequencing data☆26Nov 14, 2023Updated 2 years ago
- Explore the Hi-Cs☆12Jul 25, 2026Updated 2 months ago
- R package for Flexible dot plots☆29Jun 19, 2022Updated 4 years ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆32Dec 22, 2022Updated 3 years ago
- Variance stabilizing transformation for Gamma Poisson distributed data☆22Apr 11, 2023Updated 3 years ago