tengfei-emory / scBatch
Batch Effect Correction of RNA-seq Data through Sample Distance Matrix Adjustment
☆17Updated 3 years ago
Alternatives and similar repositories for scBatch:
Users that are interested in scBatch are comparing it to the libraries listed below
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 5 years ago
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- ☆12Updated 9 months ago
- Bead-based single-cell atac processing☆31Updated 3 years ago
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- corto (Correlation Tool): an R package to generate correlation-based DPI networks☆20Updated last year
- R package for benchmarking single cell analysis methods☆30Updated last year
- Calculation of distance metrics for matrices☆25Updated 5 years ago
- ☆14Updated 5 years ago
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆21Updated 7 months ago
- ☆12Updated 5 years ago
- Isoform-level expression patterns in single-cell RNA-sequencing data☆11Updated last year
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆17Updated 2 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆15Updated 3 years ago
- Clone of the Bioconductor repository for the batchelor package.☆16Updated 7 months ago
- ☆38Updated 4 years ago
- Normalization for single cell RNA-seq data☆9Updated 2 years ago
- R package for Flexible dot plots☆29Updated 2 years ago
- Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds☆10Updated 5 years ago
- GLASS consortium☆13Updated 2 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆19Updated 2 years ago
- Cluster Identity Predictor (R package implementation)☆19Updated 2 years ago
- countsimQC - Compare characteristic features of count data sets☆27Updated last month
- repo to explore spatial data in R/Bioconductor and Python☆12Updated 5 years ago
- Differential Expression with Capture Efficiency adjustmeNT☆14Updated 2 years ago
- satuRn is a highly performant and scalable method for performing differential transcript usage analyses.☆21Updated last year
- Hierarchical classification of cells☆23Updated 6 months ago
- Cell type purification by single-cell transcriptome-trained sorting☆14Updated 5 years ago
- post-clustering differential expression test☆35Updated 5 years ago