Batch Effect Correction of RNA-seq Data through Sample Distance Matrix Adjustment
☆18Jun 3, 2021Updated 4 years ago
Alternatives and similar repositories for scBatch
Users that are interested in scBatch are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Single Cell RNA-seq UMI Filtering Facilitator☆11Oct 6, 2025Updated 7 months ago
- ☆65Mar 18, 2025Updated last year
- Normalization for single cell RNA-seq data☆10Aug 25, 2022Updated 3 years ago
- ☆13Sep 30, 2023Updated 2 years ago
- Code used for mouse single cell RNAseq testis atlas☆12Nov 28, 2020Updated 5 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- R package for easy interop between Perseus and R☆17Sep 9, 2022Updated 3 years ago
- SAFE (Single-cell Aggregated clustering From Ensemble): Cluster ensemble for single-cell RNA-seq data☆19Mar 27, 2021Updated 5 years ago
- Pairwise Hierarchical Model☆20Mar 11, 2022Updated 4 years ago
- cgat-flow repository☆16May 10, 2026Updated 2 weeks ago
- 10x single cell RNA-seq data from the developing mouse retina☆16Mar 11, 2021Updated 5 years ago
- ☆12Jan 27, 2022Updated 4 years ago
- A repository for benchmarking spatial deconvolution and mapping tools☆36May 13, 2025Updated last year
- CellRegMap: A statistical framework for mapping context-specific regulatory variants using scRNA-seq☆25Aug 20, 2024Updated last year
- ☆11Aug 21, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Clone of the Bioconductor repository for the batchelor package.☆20Apr 9, 2026Updated last month
- An alignment and analysis pipeline for Ribosome Profiling and RNA-seq data☆13Jul 2, 2024Updated last year
- ☆11May 5, 2023Updated 3 years ago
- Semi-parametric simulation of bulk and single cell RNA-seq data☆10Nov 17, 2024Updated last year
- Comparison of dimensionality reduction methods☆30Mar 24, 2020Updated 6 years ago
- mosaicMPI: mosaic multi-resolution program integration☆12May 13, 2026Updated 2 weeks ago
- ☆29Feb 1, 2023Updated 3 years ago
- R package for the inference of cell fate bias from single-cell RNA-seq data.☆23Jun 14, 2022Updated 3 years ago
- ☆12Nov 7, 2022Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data☆30Mar 2, 2020Updated 6 years ago
- Toolkit for untargeted metabolomics profiling☆13Aug 25, 2025Updated 9 months ago
- Fast algorithms for GLM-PCA.☆16Mar 12, 2025Updated last year
- Batch effect adjustment based on negative binomial regression for RNA sequencing count data☆208Sep 24, 2020Updated 5 years ago
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆22Jun 28, 2024Updated last year
- R package for gene selection using k-NN graphs.☆14Jun 12, 2023Updated 2 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆49Jul 20, 2022Updated 3 years ago
- STARRPeaker: STARR-seq peak caller☆17Jul 6, 2022Updated 3 years ago
- SCODE : an efficient regulatory network inference algorithm from single-cell RNA-Seq during differentiation☆48Dec 12, 2019Updated 6 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Biology-centered data-driven quality control for scRNA-seq☆21May 22, 2023Updated 3 years ago
- A Python package for gene network analysis☆33Jun 22, 2022Updated 3 years ago
- AIDE: annotation-assisted isoform discovery and quantification from RNA-seq data☆14Aug 6, 2022Updated 3 years ago
- Package to perform annotations of features from LC-MS All-ion fragmentation (AIF) metabolomics datasets☆14Apr 13, 2026Updated last month
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆21May 4, 2026Updated 3 weeks ago
- Processing scripts for single cell DNA sequencing on the Tapestri platform☆24Apr 11, 2023Updated 3 years ago
- Capybara: A computational tool to measure cell identity and fate transitions☆63May 23, 2022Updated 4 years ago