single-cell-genetics / singlecell_endodiff_paper
Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression
☆15Updated 7 months ago
Alternatives and similar repositories for singlecell_endodiff_paper:
Users that are interested in singlecell_endodiff_paper are comparing it to the libraries listed below
- ☆31Updated 9 months ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆42Updated last year
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆21Updated 7 months ago
- ☆45Updated 6 months ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆25Updated 4 months ago
- Code to run the scHLApers pipeline for personalized single-cell HLA quantification☆17Updated last year
- Repository for scRNAseq study of human kidneys☆15Updated 5 years ago
- ☆18Updated 11 months ago
- ☆20Updated 7 months ago
- ☆12Updated 7 months ago
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆15Updated 2 years ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- R package for SIGMA, a clusterability measure for scRNA-seq data☆12Updated 3 years ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆17Updated last year
- Identified novel mouse spermatogenesis biomarkers based on single-cell RNA sequencing data☆11Updated 2 years ago
- Clone of the Bioconductor repository for the batchelor package.☆16Updated 7 months ago
- Cluster Identity Predictor (R package implementation)☆19Updated 2 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 3 months ago
- Single-cell Orientation Tracing☆21Updated 3 years ago
- Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"☆20Updated 6 years ago
- Ordering gene-expression and functional events in single-cell experiments☆21Updated 11 months ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆28Updated 2 years ago
- ☆10Updated 7 months ago
- ☆16Updated 2 years ago
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆17Updated 2 years ago
- Bead-based single-cell atac processing☆31Updated 3 years ago
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆18Updated 3 months ago
- A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest …☆24Updated 2 years ago
- ☆16Updated last year
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆35Updated 3 years ago