single-cell-genetics / singlecell_endodiff_paper
Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression
☆15Updated 4 months ago
Related projects ⓘ
Alternatives and complementary repositories for singlecell_endodiff_paper
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆42Updated last year
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆22Updated 4 months ago
- ☆30Updated 6 months ago
- ☆27Updated 3 months ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆33Updated 3 years ago
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆15Updated 2 years ago
- Cluster Identity Predictor (R package implementation)☆18Updated 2 years ago
- ☆18Updated 4 months ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆21Updated 5 years ago
- ☆29Updated last year
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆17Updated 10 months ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆17Updated last year
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- Bead-based single-cell atac processing☆31Updated 3 years ago
- ☆16Updated 2 years ago
- ☆29Updated 5 years ago
- Cell type enrichment analysis using gene signatures and cluster markers☆9Updated 6 years ago
- Repository for scRNAseq study of human kidneys☆15Updated 5 years ago
- ☆29Updated 8 months ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆24Updated last month
- A re-analysis of the [Single-cell transcriptomic analysis of Alzheimer’s disease](https://www.nature.com/articles/s41586-019-1195-2) usin…☆14Updated 11 months ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆15Updated 2 years ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆73Updated last year
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆32Updated last year
- Clone of the Bioconductor repository for the batchelor package.☆16Updated 4 months ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆38Updated 2 years ago
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆17Updated 2 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆22Updated 2 years ago
- ☆11Updated 4 months ago
- ☆40Updated 3 months ago
- scWGCNA☆55Updated 2 years ago