Alternatives and similar repositories for scMAGIC

Users that are interested in scMAGIC are comparing it to the libraries listed below

• wenweixiong / MARVEL
  ☆51Updated last year
• gxiaolab / scAllele
  ☆38Updated last month
• lijxug / CSOmapR
  R package of CSOmap(developing
  ☆13Updated 3 years ago
• califano-lab / single-cell-pipeline
  ☆50Updated 5 years ago
• UPSUTER / GEMLI
  ☆32Updated 8 months ago
• omicsCore / scTyper
  scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data
  ☆31Updated 2 years ago
• BMILAB / scAPAtrap
  ☆24Updated last year
• aet21 / EpiSCORE
  Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles
  ☆33Updated 6 months ago
• phillipnicol / scDist
  Robust identification of perturbed cell types in single-cell RNA-seq data
  ☆33Updated 10 months ago
• KChen-lab / METAFlux
  ☆73Updated last year
• shengxin321 / HumanKidney_eQTL_and_snATAC-seq
  codes used in the human kidney eQTL(cf) and eQTL(ci) and snATAC-seq data
  ☆19Updated 4 years ago
• Japrin / scPip
  A pipeline for scRNA-seq data analysis
  ☆15Updated 6 months ago
• Xiaxy-XuLab / PanCAF
  ☆37Updated 3 years ago
• Jiaxin-Fan / MuSiC2
  cell type deconvolution for multi-condition bulk RNA-seq data
  ☆28Updated 3 years ago
• haniffalab / scRNA-seq_analysis
  Single cell RNA-seq analysis bundle
  ☆36Updated 6 years ago
• SGI-LungCancer / SingleCell
  Code repository for single cell RNA-seq
  ☆37Updated 4 years ago
• lkmklsmn / MitoTrace
  ☆18Updated last year
• CFeregrino / scWGCNA
  scWGCNA
  ☆61Updated 2 years ago
• neurorestore / DE-analysis
  ☆39Updated 4 years ago
• FloWuenne / scFunctions
  Functions for single cell data analysis
  ☆32Updated 4 years ago
• ElkonLab / scAPA
  This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.
  ☆23Updated 3 years ago
• EDePasquale / DoubletDecon
  A tool for removing doublets from single-cell RNA-seq data
  ☆75Updated 4 years ago
• horsedayday / eQTLsingle
  ☆15Updated 2 years ago
• chensujun / scRNA
  ☆32Updated 4 years ago
• tgen / banovichlab
  Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).
  ☆46Updated last year
• McGranahanLab / TcellExTRECT
  ☆47Updated 8 months ago
• HaojiaWu / plot1cell
  A R package for advanced single cell data viz
  ☆68Updated last month
• Teichlab / Genes2Genes
  Aligning gene expression trajectories of single-cell reference and query systems
  ☆76Updated last month
• mahmoudibrahim / genesorteR
  Feature Ranking in (possibly large) Clustered Single Cell Data
  ☆40Updated 4 years ago
• navinlabcode / HumanBreastCellAtlas
  Repository for codes for the HBCA paper
  ☆38Updated 2 years ago