morris-lab / BiddyetalWorkflowLinks
This repository contains our CellTag workflow, as deployed in our 2018 Biddy et al., Nature paper.
☆32Updated last year
Alternatives and similar repositories for BiddyetalWorkflow
Users that are interested in BiddyetalWorkflow are comparing it to the libraries listed below
Sorting:
- Functional Inference of Gene Regulation☆46Updated last year
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆41Updated 2 years ago
- Functions for single cell data analysis☆32Updated 4 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆76Updated last month
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated 10 months ago
- ☆34Updated 6 years ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆61Updated last year
- ☆32Updated 8 months ago
- ☆50Updated 5 years ago
- Analysis of cell-cell communication at single-cell resolution☆104Updated last year
- Gene regulatory network containing signed transcription factor-target gene interactions☆87Updated 4 months ago
- ☆59Updated 3 months ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆38Updated 4 years ago
- scWGCNA☆61Updated 2 years ago
- Single cell RNA-seq analysis bundle☆36Updated 6 years ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆56Updated 5 months ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated last year
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated 11 months ago
- Gene group activity utility functions for Scanpy☆90Updated 9 months ago
- Data and analysis scripts for our Embryo Timecourse paper.☆69Updated 5 years ago
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- Single cell omics biology annotations☆51Updated 5 months ago
- ☆41Updated 4 years ago
- All software used for “Decoding human fetal liver haematopoiesis” (Popescu, Botting, Stephenson et al., 2019).☆39Updated 5 years ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- Implements *CellAnnotator (aka *CAT/starCAT), annotating scRNA-Seq with predefined gene expression programs☆62Updated 2 weeks ago
- R package for pathway analysis in scRNA-seq data☆75Updated last year
- ☆57Updated last year