morris-lab / BiddyetalWorkflow
This repository contains our CellTag workflow, as deployed in our 2018 Biddy et al., Nature paper.
☆32Updated 9 months ago
Alternatives and similar repositories for BiddyetalWorkflow:
Users that are interested in BiddyetalWorkflow are comparing it to the libraries listed below
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- R-package for the analysis of single-cell TCR/BCR data in the Seurat ecosystem☆19Updated 2 years ago
- ☆37Updated 3 years ago
- Functional Inference of Gene Regulation☆41Updated 9 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆27Updated 4 months ago
- mutation(barcode) caller for 10x single cell data☆44Updated 4 years ago
- Mapping the Functional Landscape of TCR Repertoire☆34Updated 3 years ago
- ☆35Updated 7 months ago
- ☆40Updated 4 years ago
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆21Updated 10 months ago
- ☆49Updated 6 months ago
- Single cell epigenomic clustering based on accessibility pattern☆22Updated 2 years ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- Functions for single cell data analysis☆31Updated 3 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆25Updated 5 months ago
- Collection of scripts for analysis of pan fetal immune atlas☆26Updated 2 years ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆40Updated 3 months ago
- ☆32Updated 5 years ago
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆41Updated last year
- Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection☆40Updated 3 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆34Updated 4 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆63Updated 5 months ago
- scWGCNA☆58Updated 2 years ago
- Identify genes with spatial expression trends in single-cell gene expression data☆50Updated 7 years ago
- Single cell RNA-seq analysis bundle☆34Updated 5 years ago
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆40Updated 2 years ago
- R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.☆44Updated 3 months ago
- Single-cell Case Control Analysis☆48Updated 5 months ago
- ☆30Updated 2 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆61Updated 11 months ago