R package for single-cell RNA-sequencing analysis
☆15Sep 30, 2025Updated 6 months ago
Alternatives and similar repositories for Antler
Users that are interested in Antler are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Single-cell RNA-seq analysis from "Single cell transcriptomics reveals spatial and temporal dynamics of gene expression in the developing…☆27May 12, 2020Updated 5 years ago
- Identified novel mouse spermatogenesis biomarkers based on single-cell RNA sequencing data☆11Jun 7, 2022Updated 3 years ago
- The following repository contains code for all scRNAseq analysis and visualization performed in the paper: Single cell resolution analysi…☆18Oct 22, 2021Updated 4 years ago
- A computation framework designed to detect differential junctions usage between two groups at single cell level☆13Feb 1, 2021Updated 5 years ago
- ☆11Jun 10, 2024Updated last year
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆16Jun 28, 2025Updated 9 months ago
- Ordering gene-expression and functional events in single-cell experiments☆30Mar 7, 2026Updated last month
- Differential expression (DE); gene set Enrichment Analysis (GSEA); single cell RNAseq studies (scRNAseq)☆34Oct 6, 2022Updated 3 years ago
- Robust single cell clustering and comparison of population compositions across tissues and experimental models via similarity analysis.☆15Jul 16, 2023Updated 2 years ago
- Source code and data supporting "Evaluating measures of association for single-cell transcriptomics"☆17Feb 25, 2019Updated 7 years ago
- R-code used for single-cell RNA-Seq analysis of kidney data.☆18Oct 17, 2019Updated 6 years ago
- This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.☆21Oct 19, 2022Updated 3 years ago
- MRtree R implementation☆14Mar 1, 2023Updated 3 years ago
- Neural Crest Fate Decisions☆11Jul 9, 2019Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- BingleSeq - A user-friendly R package for Bulk and Single-cell RNA-Seq data analyses☆24Jul 11, 2021Updated 4 years ago
- Single cell RNA analysis about paper “Caloric restriction reprograms the single-cell transcriptional landscape of Rattus norvegicus aging…☆29Jan 3, 2020Updated 6 years ago
- ☆49Mar 1, 2018Updated 8 years ago
- R implementation of MULTI-seq sample classification workflow☆66Nov 22, 2023Updated 2 years ago
- Linear trajectory inference for single-cell RNA-seq☆62Nov 26, 2025Updated 4 months ago
- scRNAseq clustering tool☆11Apr 14, 2020Updated 6 years ago
- Overview of the scripts used to analyse the brainimmuneatlas data☆19Oct 20, 2020Updated 5 years ago
- Single-cell transcriptome profiling of an adult human cell atlas of 15 major organs☆39Jan 14, 2024Updated 2 years ago
- Code and scripts used in analysis of snRNAseq cerebellar cortex atlas☆13Oct 11, 2021Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of single-cell data☆181Dec 18, 2021Updated 4 years ago
- Single cell RNA-seq analysis bundle☆37Sep 13, 2019Updated 6 years ago
- Comparison of single cell normalization strategies☆11Aug 13, 2021Updated 4 years ago
- Combined clonality and transcriptome scRNAseq clustering method☆11Dec 3, 2022Updated 3 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆32Feb 28, 2022Updated 4 years ago
- A tool for removing doublets from single-cell RNA-seq data☆75Dec 2, 2020Updated 5 years ago
- "Dissecting cell-type composition and activity-dependent transcriptional state in mammalian brains by massively parallel single-nucleus R…☆13Jan 7, 2018Updated 8 years ago
- A scalable SCENIC workflow for single-cell gene regulatory network analysis☆174Dec 8, 2022Updated 3 years ago
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆27Mar 3, 2020Updated 6 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- A barcode demultiplexer for Oxford Nanopore long-read amplicon sequencing data☆10Nov 27, 2024Updated last year
- Algorithms for single-cell analysis☆29Jul 19, 2021Updated 4 years ago
- scRNA seq analysis using Seurat V3☆13Jun 23, 2021Updated 4 years ago
- The million-scale method for single-cell analysis☆10Jul 6, 2023Updated 2 years ago
- GESTALT processing pipeline for barcodes captured with single-cell RNA sequencing☆13Jan 26, 2020Updated 6 years ago
- A local realigner around InDels for MethylSeq data☆12Apr 28, 2016Updated 9 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Oct 25, 2024Updated last year