Mathbiomed / scLENS

Related projects: ⓘ

• kostkalab / vaeda
  Vaeda method for computational doublet annotation
  ☆13Updated 2 months ago
• pachterlab / GFCP_2022
  RNA velocity validation
  ☆23Updated 2 years ago
• hsmaan / Iniquitate
  Analysis of imbalanced data and its impacts in a scRNA-seq integration setting
  ☆27Updated 3 months ago
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆38Updated 6 months ago
• Jiaxin-Fan / MuSiC2
  cell type deconvolution for multi-condition bulk RNA-seq data
  ☆22Updated 2 years ago
• loosolab / scanpro
  ☆12Updated last month
• azizilab / decipher
  A single-cell analysis toolkit to jointly analyze samples from distinct conditions
  ☆18Updated last week
• MarioniLab / oor_design_reproducibility
  ☆14Updated last year
• ZJUFanLab / CellTalkDB
  A manually curated database of literature-supported ligand-receptor interactions in human and mouse
  ☆25Updated 2 months ago
• JDBLab / Pancreas_ductal_scRNAseq
  The following repository contains code for all scRNAseq analysis and visualization performed in the paper: Single cell resolution analysi…
  ☆16Updated 2 years ago
• JinmiaoChenLab / ezSingleCell2
  ☆32Updated 8 months ago
• rs239 / velorama
  Gene regulatory network inference for RNA velocity and pseudotime data
  ☆22Updated 7 months ago
• ChanghanGitHub / exFINDER
  Identifying external communication signals using single-cell transcriptomics data
  ☆17Updated 3 months ago
• zakieh-tayyebi / CellSpace
  Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace
  ☆30Updated 6 months ago
• jiang-junyao / IReNA
  R package IReNA
  ☆26Updated 4 months ago
• soumelis-lab / ICELLNET
  ☆18Updated 4 months ago
• jiang-junyao / CACIMAR
  cross-species analysis of cell identities, markers and regulations
  ☆12Updated 3 weeks ago
• bendemeo / shannonca
  Information-based dimensionality reduction
  ☆29Updated last month
• LungCellAtlas / scRNAseq_pipelines
  Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas
  ☆27Updated 3 years ago
• MarioniLab / oor_benchmark
  A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data
  ☆12Updated 9 months ago
• ZornLab / Single-cell-transcriptomics-reveals-a-signaling-roadmap-coordinating-endoderm-and-mesoderm-lineage
  Code and Data Availability for Single cell transcriptomics reveals a signaling roadmap coordinating endoderm and mesoderm lineage diversi…
  ☆9Updated 4 years ago
• edroaldo / fusca
  Framework for Unified Single-Cell Analysis (FUSCA) is a software package for single-cell data analysis developed in R. At the moment, it …
  ☆17Updated last year
• MarioniLab / hbca
  Code used to process the data of the HBCA project
  ☆21Updated 7 months ago
• ImXman / MACA
  MACA: Marker-based automatic cell-type annotation for single cell expression data
  ☆25Updated last year
• JinmiaoChenLab / FastIntegration
  FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis
  ☆22Updated last year
• chanwkimlab / MarcoPolo
  MarcoPolo is a clustering-free approach to the exploration of bimodally expressed genes along with group information in single-cell RNA-s…
  ☆19Updated last year
• Vivianstats / scINSIGHT
  Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data
  ☆19Updated 5 months ago
• SunXQlab / scMLnet
  Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks
  ☆22Updated 3 years ago
• lanagarmire / Single-cell-drug-repositioning
  ☆14Updated 2 months ago
• theislab / scPoli_reproduce
  Reproducibility notebooks for scPoli
  ☆13Updated last year