☆55Jan 14, 2026Updated last month
Alternatives and similar repositories for systema
Users that are interested in systema are comparing it to the libraries listed below
Sorting:
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆17Apr 20, 2024Updated last year
- pytorch dataloaders for single-cell perturbation data☆43Feb 23, 2026Updated last week
- ☆14Oct 24, 2025Updated 4 months ago
- Code for spatial subclone paper☆16Jan 23, 2025Updated last year
- cTPnet Package☆27Jul 12, 2022Updated 3 years ago
- ☆40Jan 26, 2026Updated last month
- A computational tool for identification of 3D multi-modal spatial neighborhoods☆15Aug 1, 2025Updated 7 months ago
- The R Bioconductor package for scMAGeCK.☆13Apr 20, 2024Updated last year
- Modeling of time series data for CRISPR KO experiments☆38Jan 5, 2026Updated last month
- scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism☆18Oct 17, 2024Updated last year
- ☆72Jul 18, 2025Updated 7 months ago
- Single-cell perturbation analysis☆289Feb 23, 2026Updated last week
- Automatic selection of number of principal components☆17Jun 27, 2022Updated 3 years ago
- BulkFormer: A large-scale foundation model for human bulk transcriptomes☆42Dec 14, 2025Updated 2 months ago
- ☆46Jun 16, 2025Updated 8 months ago
- ☆18Jul 30, 2022Updated 3 years ago
- ☆26Apr 1, 2025Updated 11 months ago
- CellWalkR: An R Package for integrating single-cell and bulk data to resolve regulatory elements☆22Oct 8, 2025Updated 4 months ago
- Python client for the OmniPath web service☆59Feb 19, 2026Updated last week
- ☆25Oct 10, 2025Updated 4 months ago
- ☆19Feb 20, 2018Updated 8 years ago
- A Tidy Framework to Hack Gene Expression Signatures☆20Apr 20, 2025Updated 10 months ago
- ☆60Feb 21, 2026Updated last week
- State is a machine learning model that predicts cellular perturbation response across diverse contexts☆526Feb 24, 2026Updated last week
- ☆63Dec 27, 2023Updated 2 years ago
- Single-cell disease relevance score (scDRS)☆176Sep 2, 2025Updated 6 months ago
- identifying disease critical cell types and programs from single cell RNAseq☆58May 30, 2022Updated 3 years ago
- ☆62Dec 8, 2025Updated 2 months ago
- ☆33Feb 21, 2024Updated 2 years ago
- Causal inference for recommendation☆25Jan 19, 2019Updated 7 years ago
- Whole mouse brain snATAC seq analysis☆29Apr 18, 2025Updated 10 months ago
- Single Cell Multi-omics deep clustering☆29Jul 1, 2025Updated 8 months ago
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆179Mar 27, 2025Updated 11 months ago
- An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.☆35Sep 4, 2025Updated 5 months ago
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆35Jan 8, 2025Updated last year
- A foundation model for single-cell epigenomic data☆58Jan 6, 2026Updated last month
- Modeling complex perturbations with CellFlow☆120Feb 23, 2026Updated last week
- ☆39Jan 19, 2026Updated last month
- cell type specific, trait-associated gene regulation☆29Mar 31, 2025Updated 11 months ago