mlbio-epfl / systemaLinks
☆52Updated 3 weeks ago
Alternatives and similar repositories for systema
Users that are interested in systema are comparing it to the libraries listed below
Sorting:
- ☆90Updated last year
- Additional code and analysis from the single-cell integration benchmarking project☆71Updated 3 years ago
- Models and datasets for perturbational single-cell omics☆172Updated 3 years ago
- End-to-end analysis of spatial multi-omics data☆102Updated last week
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆165Updated 11 months ago
- Accelerated, Python-only, single-cell integration benchmarking metrics☆85Updated last week
- ☆60Updated last year
- scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics☆113Updated 4 months ago
- Sequence-based Modeling of single-cell ATAC-seq using Convolutional Neural Networks.☆100Updated 4 months ago
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆117Updated 2 years ago
- Unsupervised Deep Disentangled Representation of Single-Cell Omics☆59Updated last week
- ☆85Updated 5 months ago
- Online single-cell data integration through projecting heterogeneous datasets into a common cell-embedding space☆81Updated 3 weeks ago
- ☆52Updated 3 months ago
- Single cell omics biology annotations☆53Updated 9 months ago
- ☆47Updated 6 months ago
- Transformer for One-Stop Interpretable Cell-type Annotation☆146Updated last year
- Deep learning model for single-cell inference of multi-omic profiles from a single input modality.☆46Updated 2 years ago
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆48Updated 4 years ago
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆77Updated last year
- Predict RNA velocity through deep learning☆72Updated 2 years ago
- ☆62Updated last year
- ☆59Updated 3 weeks ago
- BANKSY: Spatial Clustering Algorithm that Unifies Cell-Typing and Tissue Domain Segmentation. Python package for spatial transcriptomics …☆72Updated 2 months ago
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆149Updated 3 years ago
- ☆124Updated this week
- A simulator for single cell multi-omics and spatial omics data that provides ground truth to benchmark a wide range of methods.☆69Updated 3 months ago
- SIMBA: SIngle-cell eMBedding Along with features☆66Updated last year
- ☆48Updated 2 years ago
- Python agent-based model tool for inference, visualization and analysis of cell-cell communication from single-cell data☆35Updated 2 months ago