☆60Feb 21, 2026Updated last week
Alternatives and similar repositories for CytoSig
Users that are interested in CytoSig are comparing it to the libraries listed below
Sorting:
- Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts☆14Jul 5, 2023Updated 2 years ago
- R package to use EaSIeR to predict anti-tumor immune response from bulk RNA-seq☆15Dec 1, 2025Updated 2 months ago
- ☆11Jul 18, 2025Updated 7 months ago
- ☆17Sep 16, 2024Updated last year
- ImmuCellAI (Immune Cell Abundance Identifier) is a tool to estimate the abundance of 24 immune cells from gene expression dataset includi…☆15May 25, 2025Updated 9 months ago
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆143Nov 10, 2023Updated 2 years ago
- A minimal gene set characterizes multiple classes of tumor-specific TIL among different cancer types☆11Mar 4, 2025Updated 11 months ago
- Single-Cell Inference of Class Switch Recombination☆20Feb 11, 2026Updated 2 weeks ago
- ☆26Apr 1, 2025Updated 10 months ago
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package☆124Feb 21, 2026Updated last week
- LIANA: a LIgand-receptor ANalysis frAmework☆232Aug 7, 2024Updated last year
- Python Toolkit for Transcription Factor Activity Inference and Clustering of scRNA-seq Data☆33Dec 15, 2025Updated 2 months ago
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆122Dec 5, 2025Updated 2 months ago
- Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms☆189Jan 30, 2026Updated last month
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆70Nov 2, 2025Updated 3 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆83Aug 10, 2025Updated 6 months ago
- R package for pathway analysis in scRNA-seq data☆77Aug 17, 2024Updated last year
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆412Aug 22, 2025Updated 6 months ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆64Apr 14, 2024Updated last year
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆40Sep 5, 2021Updated 4 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆45Sep 3, 2025Updated 5 months ago
- Cell type prioritization in single-cell data☆138Oct 23, 2024Updated last year
- Finding the causality in biological pathways☆14Jul 12, 2023Updated 2 years ago
- Regulatory networks with Direct Information in python☆40Mar 9, 2023Updated 2 years ago
- NicheNet: predict active ligand-target links between interacting cells☆620Nov 12, 2025Updated 3 months ago
- Demultiplexing pooled scRNA-seq data with or without genotype reference☆96Apr 11, 2025Updated 10 months ago
- Ordering gene-expression and functional events in single-cell experiments☆29Feb 15, 2026Updated last week
- Predictor of TCR-epitope interactions☆34Sep 9, 2025Updated 5 months ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆378Jul 30, 2025Updated 6 months ago
- Construct Tumor Transition Zone Microenvironment☆55Jun 25, 2025Updated 8 months ago
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆179Mar 27, 2025Updated 11 months ago
- Gene group activity utility functions for Scanpy☆100Dec 21, 2024Updated last year
- Slides and Notebooks for scverse 2024☆17Sep 24, 2024Updated last year
- Feature Ranking in (possibly large) Clustered Single Cell Data☆41Apr 15, 2021Updated 4 years ago
- Clonotype Neighbor Graph Analysis☆95Feb 12, 2026Updated 2 weeks ago
- Finding gene expression states in scRNA-seq data☆50Mar 22, 2024Updated last year
- LIANA+: an all-in-one framework for cell-cell communication☆271Jan 24, 2026Updated last month
- Utilizing single-cell omics from patients tumor to predict response and resistance.☆71Apr 25, 2023Updated 2 years ago
- Visualizing SingleCell data Using GGplot2☆36Sep 28, 2024Updated last year