data2intelligence / CytoSig
☆46Updated last month
Related projects ⓘ
Alternatives and complementary repositories for CytoSig
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆77Updated last year
- ☆58Updated 5 years ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆91Updated 11 months ago
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆59Updated last year
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆61Updated 2 years ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆38Updated 3 years ago
- Analysis of cell-cell communication at single-cell resolution☆96Updated 2 months ago
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆66Updated this week
- R package for pathway analysis in scRNA-seq data☆62Updated 3 months ago
- R package for semi-supervised single-cell data integration☆75Updated 9 months ago
- ☆26Updated last year
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆50Updated last month
- Collection of scripts for analysis of pan fetal immune atlas☆25Updated 2 years ago
- ☆59Updated 4 years ago
- Construct Tumor Transition Zone Microenvironment☆35Updated this week
- Coarse-graining of large single-cell RNA-seq data into metacells☆68Updated 2 months ago
- ☆108Updated 2 years ago
- ☆48Updated 4 months ago
- ☆39Updated 3 years ago
- Single-cell Lung Cancer Atlas with 1.2M cells☆59Updated last year
- Inference of cell-cell communication from single-cell RNAseq data☆46Updated last year
- Estimation of Single-Cell Potency with Single Cell Entropy☆38Updated last year
- Single Cell Analysis Operations☆13Updated 8 months ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆92Updated 5 months ago
- A tool for semi-automatic cell type harmonization and integration☆94Updated 10 months ago
- Direct estimation of mean and covariance from single cell RNA seq experiments☆75Updated 5 months ago
- Codes used in pan-T cell analysis☆49Updated last year
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆93Updated 5 months ago
- Functions for single cell data analysis☆27Updated 3 years ago
- Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis☆47Updated 6 months ago