☆63Feb 21, 2026Updated 3 months ago
Alternatives and similar repositories for CytoSig
Users that are interested in CytoSig are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts☆15Jul 5, 2023Updated 2 years ago
- R package to use EaSIeR to predict anti-tumor immune response from bulk RNA-seq☆15Dec 1, 2025Updated 6 months ago
- ☆13Jul 18, 2025Updated 10 months ago
- Single-Cell Inference of Class Switch Recombination☆23Feb 11, 2026Updated 3 months ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆41Sep 5, 2021Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A minimal gene set characterizes multiple classes of tumor-specific TIL among different cancer types☆11Mar 4, 2025Updated last year
- LIANA: a LIgand-receptor ANalysis frAmework☆242Aug 7, 2024Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆88Aug 10, 2025Updated 9 months ago
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆155Nov 10, 2023Updated 2 years ago
- ☆17Sep 16, 2024Updated last year
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package☆127Updated this week
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆440Apr 11, 2026Updated last month
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆78Mar 28, 2026Updated 2 months ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆66Apr 14, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆28Apr 1, 2025Updated last year
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆127Mar 19, 2026Updated 2 months ago
- ImmuCellAI (Immune Cell Abundance Identifier) is a tool to estimate the abundance of 24 immune cells from gene expression dataset includi…☆18May 25, 2025Updated last year
- R package for pathway analysis in scRNA-seq data☆81Aug 17, 2024Updated last year
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆86Mar 20, 2025Updated last year
- Finding the causality in biological pathways☆14Jul 12, 2023Updated 2 years ago
- Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms☆197Jan 30, 2026Updated 4 months ago
- Visualizing SingleCell data Using GGplot2☆37Sep 28, 2024Updated last year
- Python Toolkit for Transcription Factor Activity Inference and Clustering of scRNA-seq Data☆37Dec 15, 2025Updated 5 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Slides and Notebooks for scverse 2024☆16Sep 24, 2024Updated last year
- Clonotype Neighbor Graph Analysis☆98Apr 29, 2026Updated last month
- Construct Tumor Transition Zone Microenvironment☆58Jun 25, 2025Updated 11 months ago
- Demultiplexing pooled scRNA-seq data with or without genotype reference☆103Apr 11, 2025Updated last year
- The single T cell annotation tool for scRNA-seq data☆27Apr 25, 2025Updated last year
- Feature Ranking in (possibly large) Clustered Single Cell Data☆42Apr 15, 2021Updated 5 years ago
- R implementation of GeneTrajectory☆71May 9, 2026Updated last month
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆190Mar 27, 2025Updated last year
- Regulatory networks with Direct Information in python☆41Mar 9, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Ordering gene-expression and functional events in single-cell experiments☆32May 31, 2026Updated last week
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆47Sep 3, 2025Updated 9 months ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆400May 6, 2026Updated last month
- Cell type prioritization in single-cell data☆143Mar 26, 2026Updated 2 months ago
- Gene group activity utility functions for Scanpy☆106Dec 21, 2024Updated last year
- ☆94Updated this week
- R package for Pathway RespOnsive GENe activity inference☆124Jan 30, 2023Updated 3 years ago