data2intelligence / CytoSig
☆43Updated 9 months ago
Related projects: ⓘ
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆73Updated 11 months ago
- ☆57Updated 5 years ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆36Updated 3 years ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆87Updated 9 months ago
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆62Updated 3 months ago
- Methods to discover gene programs on single-cell data☆69Updated last month
- Analysis of cell-cell communication at single-cell resolution☆96Updated last week
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆61Updated 2 years ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆50Updated 2 months ago
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆55Updated last year
- ☆57Updated 4 years ago
- Codes used in pan-T cell analysis☆45Updated last year
- Single-cell Lung Cancer Atlas with 1.2M cells☆57Updated 10 months ago
- Collection of scripts for analysis of pan fetal immune atlas☆24Updated 2 years ago
- R package for pathway analysis in scRNA-seq data☆57Updated last month
- R package for Pathway RespOnsive GENe activity inference☆92Updated last year
- Method for de novo mutation calling from droplet based single cell RNA seq data☆12Updated 2 years ago
- Codes for the scPLC project☆47Updated last year
- Inference of cell-cell communication from single-cell RNAseq data☆45Updated last year
- Estimation of Single-Cell Potency with Single Cell Entropy☆37Updated last year
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆83Updated 9 months ago
- A tool for semi-automatic cell type harmonization and integration☆86Updated 7 months ago
- Data files and code for analysis of single-cell ccRCC data for the manuscript "Tumor-Specific Cell Populations in Clear Cell Renal Carcin…☆36Updated 3 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆64Updated 3 weeks ago
- Single Cell Analysis Operations☆12Updated 6 months ago
- Senescent Cell Identification☆25Updated 6 months ago
- Methods for decontamination of single cell data☆29Updated 8 months ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆55Updated 3 months ago
- Pipeline for exploring metebolic heterogeneity at single-cell resolution☆71Updated 4 years ago
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆62Updated 2 weeks ago