☆66Feb 21, 2026Updated 7 months ago
Alternatives and similar repositories for CytoSig
Users that are interested in CytoSig are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts☆16Jul 5, 2023Updated 3 years ago
- R package to use EaSIeR to predict anti-tumor immune response from bulk RNA-seq☆16Dec 1, 2025Updated 10 months ago
- ☆14Jul 18, 2025Updated last year
- A minimal gene set characterizes multiple classes of tumor-specific TIL among different cancer types☆11Mar 4, 2025Updated last year
- Single-Cell Inference of Class Switch Recombination☆25Jun 19, 2026Updated 3 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- LIANA: a LIgand-receptor ANalysis frAmework☆252Aug 7, 2024Updated 2 years ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆41Sep 5, 2021Updated 5 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆94Jul 28, 2026Updated 2 months ago
- single cell Flux Estimation Analysis (scFEA)☆155Nov 10, 2023Updated 2 years ago
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package☆128Sep 8, 2026Updated last month
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆475Apr 11, 2026Updated 5 months ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆80Sep 20, 2026Updated 2 weeks ago
- ☆17Sep 16, 2024Updated 2 years ago
- ☆102Updated this week
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆67Apr 14, 2024Updated 2 years ago
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆127Mar 19, 2026Updated 6 months ago
- The single T cell annotation tool for scRNA-seq data☆30Apr 25, 2025Updated last year
- ImmuCellAI (Immune Cell Abundance Identifier) is a tool to estimate the abundance of 24 immune cells from gene expression dataset includi…☆19May 25, 2025Updated last year
- R package for pathway analysis in scRNA-seq data☆82Aug 17, 2024Updated 2 years ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆92Mar 20, 2025Updated last year
- Finding the causality in biological pathways☆14Jul 12, 2023Updated 3 years ago
- Group Technical Effects (GTE)☆16Oct 18, 2025Updated 11 months ago
- Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms☆206Jan 30, 2026Updated 8 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Visualizing SingleCell data Using GGplot2☆39Sep 28, 2024Updated 2 years ago
- Slides and Notebooks for scverse 2024☆16Sep 24, 2024Updated 2 years ago
- Clonotype Neighbor Graph Analysis☆100Jun 15, 2026Updated 3 months ago
- Correlation-based approach for identification of endocrine interactions☆14Jan 18, 2022Updated 4 years ago
- ☆10Sep 2, 2024Updated 2 years ago
- Difference in Intercellular Communication from scRNA-seq data☆27Oct 14, 2025Updated 11 months ago
- Regulatory networks with Direct Information in python☆42Mar 9, 2023Updated 3 years ago
- Demultiplexing pooled scRNA-seq data with or without genotype reference☆105Apr 11, 2025Updated last year
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆423Sep 12, 2026Updated 3 weeks ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Feature Ranking in (possibly large) Clustered Single Cell Data☆42Apr 15, 2021Updated 5 years ago
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆199Aug 24, 2026Updated last month
- R implementation of GeneTrajectory☆72May 9, 2026Updated 5 months ago
- Ordering gene-expression and functional events in single-cell experiments☆33Jul 6, 2026Updated 3 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆47Sep 3, 2025Updated last year
- SCIPAC (Single- Cell and bulk data-based Identifier for Phenotype Associated Cells) is a computational method that identifies cells in si…☆16Jun 30, 2024Updated 2 years ago
- Cell type prioritization in single-cell data☆151Mar 26, 2026Updated 6 months ago