data2intelligence / CytoSigLinks
☆57Updated last year
Alternatives and similar repositories for CytoSig
Users that are interested in CytoSig are comparing it to the libraries listed below
Sorting:
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆109Updated 5 months ago
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆84Updated last year
- R package for pathway analysis in scRNA-seq data☆75Updated last year
- A tool for semi-automatic cell type harmonization and integration☆111Updated 6 months ago
- Gene group activity utility functions for Scanpy☆90Updated 9 months ago
- ☆125Updated 3 years ago
- Analysis of cell-cell communication at single-cell resolution☆104Updated last year
- Single-cell Lung Cancer Atlas with 1.2M cells☆68Updated 8 months ago
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆78Updated 2 months ago
- R package for Protein activity analysis of single-cell RNAseq.☆83Updated 2 years ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆38Updated 4 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆76Updated last month
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated last year
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆81Updated 2 years ago
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆64Updated 3 years ago
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆126Updated last year
- Accurate and fast cell marker gene identification with COSG☆51Updated 6 months ago
- Functional Inference of Gene Regulation☆46Updated last year
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆77Updated 8 months ago
- ☆32Updated 6 months ago
- R implementation of GeneTrajectory☆65Updated last year
- Pipeline for exploring metebolic heterogeneity at single-cell resolution☆74Updated 5 years ago
- In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes☆114Updated 8 months ago
- ☆62Updated 6 years ago
- Spatial transcriptomics of heart tissue☆95Updated last year
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆79Updated 6 months ago
- Codes for the scPLC project☆68Updated 2 years ago
- Codes used in pan-T cell analysis☆63Updated 2 years ago
- Draw phylogenetic trees of tumor evolution☆86Updated 2 years ago
- R package for Pathway RespOnsive GENe activity inference☆108Updated 2 years ago