Code for spatial subclone paper
☆18Jan 23, 2025Updated last year
Alternatives and similar repositories for ST_subclone_publication
Users that are interested in ST_subclone_publication are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A computational tool for identification of 3D multi-modal spatial neighborhoods☆15Aug 1, 2025Updated 9 months ago
- ☆15Oct 24, 2025Updated 6 months ago
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆17Apr 20, 2024Updated 2 years ago
- Scanner of specific spatial patterns in tissues☆14Jul 15, 2022Updated 3 years ago
- Notebooks for generating figures in "Progressive Plasticity During Colorectal Cancer Metastasis"☆22Dec 1, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- De novo reconstruction of cell interaction landscapes from single-cell spatial transcriptome data☆21Oct 11, 2022Updated 3 years ago
- ☆28Apr 1, 2025Updated last year
- ☆11May 24, 2024Updated last year
- The codes and files for the study of subsolid nodules (SSN).☆15Oct 13, 2020Updated 5 years ago
- Repo with analysis code for the vascular atlas paper☆10Nov 22, 2024Updated last year
- ☆57Aug 6, 2025Updated 9 months ago
- Systematic analyses of intronic polyadenylation from standard RNAseq data☆16Sep 10, 2024Updated last year
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆49Aug 18, 2025Updated 9 months ago
- Ratio of the interferon-γ signature to the immunosuppression signature predicts anti-PD-1 therapy response in melanoma☆13Jun 4, 2023Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆12Jun 11, 2023Updated 2 years ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆27Jan 23, 2024Updated 2 years ago
- Statistical analysis for spatial omics data☆11Jul 30, 2022Updated 3 years ago
- ☆16Sep 29, 2023Updated 2 years ago
- Gene group activity utility functions for Scanpy☆103Dec 21, 2024Updated last year
- ☆15Feb 28, 2022Updated 4 years ago
- ☆12Oct 23, 2023Updated 2 years ago
- ☆15Sep 16, 2023Updated 2 years ago
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆94Dec 8, 2022Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Repository to store code used for the analyses presented in "Defining the Regulatory Logic of Breast Cancer Using Single-Cell Epigenetic …☆22May 17, 2025Updated last year
- ☆19Oct 23, 2023Updated 2 years ago
- ☆13Sep 30, 2024Updated last year
- sc-MTOP is an analysis framework based on deep learning and computational pathology. This framework aims to characterize the tumor ecosys…☆48May 8, 2025Updated last year
- R tools for analysis and visualization of single-cell subclustering data☆19May 1, 2026Updated 2 weeks ago
- Phenotype Associated Spatial Signature Analysis with Graph-based Embedding☆26Mar 5, 2025Updated last year
- R package of CSOmap(developing☆13Mar 22, 2022Updated 4 years ago
- ☆58Aug 8, 2024Updated last year
- .h5mu files interface for Seurat☆33Nov 28, 2023Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Toolbox of the Human Neural Organoid Cell Atlas☆33Updated this week
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆56Jan 6, 2025Updated last year
- Phasing of dikaryotic fungal genome assemblies☆13Mar 1, 2023Updated 3 years ago
- Assessing the purity of single cell population☆147Jun 3, 2022Updated 3 years ago
- Toy files and training material to introduce Linux to molecular biologists☆22Jul 21, 2023Updated 2 years ago
- Reproducible analyses for the NicheCompass manuscript☆14Jul 3, 2025Updated 10 months ago
- Automatic selection of number of principal components☆17Jun 27, 2022Updated 3 years ago