Alternatives and similar repositories for cell-load

Users that are interested in cell-load are comparing it to the libraries listed below

• aaronwtr / PertEval
  Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.
  ☆31Updated 4 months ago
• TuftsBCB / RegDiffusion
  Diffusion model for gene regulatory network inference.
  ☆24Updated 5 months ago
• theislab / scTab
  ☆61Updated last year
• nitzanlab / biolord
  ☆89Updated last year
• czi-ai / transcriptformer
  ☆96Updated last month
• cantinilab / scPRINT
  🏃 The go-to single-cell Foundation Model
  ☆126Updated last week
• pinellolab / simba
  SIMBA: SIngle-cell eMBedding Along with features
  ☆65Updated last year
• const-ae / linear_perturbation_prediction-Paper
  ☆66Updated 5 months ago
• nceglia / genevector
  Vector representations of gene co-expression in single cell RNAseq.
  ☆36Updated last month
• ma-compbio / SpiceMix
  spatial transcriptome, single cell
  ☆73Updated 2 years ago
• carpenter-singh-lab / 2022_Haghighi_NatureMethods
  High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations
  ☆51Updated 4 months ago
• QuKunLab / MultiomeBenchmarking
  ☆50Updated 9 months ago
• altoslabs / perturbench
  ☆69Updated 2 months ago
• suinleelab / contrastiveVI
  ☆59Updated last year
• hui2000ji / scETM
  A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.
  ☆53Updated 3 years ago
• theislab / prophet
  ☆38Updated last week
• cole-trapnell-lab / sci-plex
  repository containing analysis scripts and auxiliary files
  ☆36Updated 5 years ago
• vandijklab / CINEMA-OT
  ☆34Updated 8 months ago
• mlbio-epfl / systema
  ☆46Updated 5 months ago
• ArcInstitute / cell-eval
  Comprehensive suite for evaluating perturbation prediction models
  ☆113Updated last week
• KrishnaswamyLab / MELD
  Quantifying experimental perturbations at single cell resolution
  ☆112Updated last year
• theislab / DRVI
  Unsupervised Deep Disentangled Representation of Single-Cell Omics
  ☆56Updated last week
• jiang-q19 / scPRAM
  scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism
  ☆17Updated last year
• chanzuckerberg / single-cell-curation
  Code and documentation for the curation of cellxgene datasets
  ☆50Updated this week
• sanderlab / scPerturb
  scPerturb: A resource and a python/R tool for single-cell perturbation data
  ☆156Updated 10 months ago
• theislab / cpa
  The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…
  ☆124Updated last year
• pinellolab / EPInformer
  code to run EPInformer for gene expression prediction and gene-enhancer link prediction
  ☆44Updated 3 months ago
• jkobject / scDataLoader
  a dataloader to work with large single cell datasets from lamindb
  ☆32Updated this week
• clinicalml / sc-foundation-eval
  Code for evaluating single cell foundation models scBERT and scGPT
  ☆46Updated last year
• DendrouLab / panpipes
  Multi-modal single cell analysis pipelines
  ☆61Updated 2 weeks ago