pytorch dataloaders for single-cell perturbation data
☆43Mar 8, 2026Updated 2 weeks ago
Alternatives and similar repositories for cell-load
Users that are interested in cell-load are comparing it to the libraries listed below
Sorting:
- Comprehensive suite for evaluating perturbation prediction models☆123Feb 26, 2026Updated 3 weeks ago
- A re-analysis of the [Single-cell transcriptomic analysis of Alzheimer’s disease](https://www.nature.com/articles/s41586-019-1195-2) usin…☆14Dec 5, 2023Updated 2 years ago
- State is a machine learning model that predicts cellular perturbation response across diverse contexts☆541Feb 24, 2026Updated 3 weeks ago
- ☆56Jan 14, 2026Updated 2 months ago
- A curated repository designed to serve as a comprehensive guide for researchers interested in the intersection of Transformer models and …☆43Dec 18, 2024Updated last year
- A cookiecutter template for creating MCP (Model Control Protocol) servers☆21Feb 8, 2026Updated last month
- Scripts for the analysis of TT-seq and DRB/TT-seq data.☆11Mar 11, 2020Updated 6 years ago
- ☆11Aug 10, 2023Updated 2 years ago
- BioDiscoveryAgent is an LLM-based AI agent for closed-loop design of genetic perturbation experiments☆99Jul 6, 2025Updated 8 months ago
- Identification of viral RdRPs in single-cell RNA sequencing data☆13Mar 12, 2026Updated last week
- Multimodal Data (.h5mu) implementation for Python☆109Updated this week
- ☆18Jul 30, 2022Updated 3 years ago
- Reproduce analyses and baselines from the State paper☆13Feb 25, 2026Updated 3 weeks ago
- Official implementation of "CellFlux: Simulating Cellular Morphology Changes via Flow Matching" (ICML 2025)☆29Sep 3, 2025Updated 6 months ago
- ☆18Dec 26, 2025Updated 2 months ago
- Publication Page for the Noack et al. 2021 Nature Neuroscience paper☆10Feb 7, 2022Updated 4 years ago
- Dense facial landmarks for thermal imaging☆16Dec 23, 2025Updated 2 months ago
- RNA-Seq normalization and quantification pipeline☆12Nov 25, 2024Updated last year
- cTPnet Package☆27Jul 12, 2022Updated 3 years ago
- A modular tool for proportion analysis in single-cell sequencing data☆25Feb 26, 2026Updated 3 weeks ago
- single-cell Contamination Detection and Correction☆17Jan 15, 2025Updated last year
- popsicleR, a flexible R package aimed at providing most of the necessary quality controls and preliminary information for complete and de…☆24Dec 3, 2025Updated 3 months ago
- ☆13Mar 2, 2026Updated 2 weeks ago
- TreeGrafter is a new software tool for annotating uncharacterized protein sequences, using annotated phylogenetic trees.☆13Updated this week
- scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism☆18Oct 17, 2024Updated last year
- The official implementation for "SANGO".☆11Mar 17, 2024Updated 2 years ago
- scMODAL: A general deep learning framework for single-cell Multi-Omics Data Alignment with feature Links☆21Jun 10, 2025Updated 9 months ago
- A data analysis Python package for the PLUTO code☆14Mar 10, 2026Updated last week
- Python package to predict enhancer-gene interactions supervised on CRISPRi data☆15Nov 21, 2023Updated 2 years ago
- Code for paper: "Removing Biases from Molecular Representations via Information Maximization"☆20Apr 4, 2024Updated last year
- ☆11Dec 15, 2025Updated 3 months ago
- ☆14Jan 3, 2024Updated 2 years ago
- ☆39Jan 19, 2026Updated 2 months ago
- Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts☆14Jul 5, 2023Updated 2 years ago
- TF MOtif Discovery from Importance SCOres☆170Feb 20, 2026Updated last month
- ☆14Apr 2, 2025Updated 11 months ago
- Single Cell Multi-omics deep clustering☆30Jul 1, 2025Updated 8 months ago
- Code repository for the SPOC tool for scoring binary AF-M predicitons.☆15Apr 27, 2025Updated 10 months ago
- See https://github.com/LTLA/SingleRBook for the latest version of this content.☆12Jun 21, 2022Updated 3 years ago