gabrielakinker / CCLE_heterogeneityView external linksLinks
☆63Dec 27, 2023Updated 2 years ago
Alternatives and similar repositories for CCLE_heterogeneity
Users that are interested in CCLE_heterogeneity are comparing it to the libraries listed below
Sorting:
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆132Sep 6, 2024Updated last year
- Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…☆31Aug 17, 2022Updated 3 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆30Apr 16, 2020Updated 5 years ago
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆55Jan 6, 2025Updated last year
- ☆114Sep 16, 2020Updated 5 years ago
- Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolu…☆65Dec 7, 2022Updated 3 years ago
- ☆17Mar 27, 2023Updated 2 years ago
- Testing a neutral evolution model on cancer sequencing data☆10Feb 17, 2021Updated 4 years ago
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆230Mar 28, 2024Updated last year
- analysis script for GBM single cell RNA seq data☆22May 26, 2021Updated 4 years ago
- Scripts from the GBM cellular states paper☆20Feb 24, 2021Updated 4 years ago
- A computational method for comparing cellular profiles with the flexibility to place a higher weight on functional features of interest.☆12Jan 31, 2023Updated 3 years ago
- ☆13Nov 2, 2017Updated 8 years ago
- Tumour Heterogeneity and Intercellular Networks of Nasopharyngeal Carcinoma at Single Cell Resolution☆13Mar 1, 2023Updated 2 years ago
- Functions to analyze copy number aberrations in single-cell data☆13Feb 3, 2025Updated last year
- Single-cell Lung Cancer Atlas with 1.2M cells☆87Jan 19, 2025Updated last year
- Single cell analysis in regenerative lineages and immune-mediated pruning in lung cancer metastasis☆23Jun 5, 2020Updated 5 years ago
- This is the repository that contains the analysis of the lung adenocarcinoma single cell dataset☆154Jan 6, 2021Updated 5 years ago
- Morphology-Enhanced Spatial Transcriptome Analysis Integrator☆27Mar 16, 2025Updated 10 months ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆116Apr 26, 2025Updated 9 months ago
- This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources…☆73Jul 26, 2018Updated 7 years ago
- Single Cell Analysis Operations☆13Nov 25, 2025Updated 2 months ago
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆407Aug 22, 2025Updated 5 months ago
- ☆37Sep 20, 2022Updated 3 years ago
- Code generated by Evelyn Fitzsimons (Regmefi)☆11Aug 30, 2024Updated last year
- Quantifying metabolism activity at the single-cell resolution☆151Jun 27, 2025Updated 7 months ago
- Pan-cancer human brain metastases atlas at single-cell resolution☆23Apr 3, 2025Updated 10 months ago
- Draw phylogenetic trees of tumor evolution☆87Jul 21, 2023Updated 2 years ago
- IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology.☆274Jan 3, 2026Updated last month
- These are scripts for pan-cacner NK cells analyses.☆76Aug 18, 2023Updated 2 years ago
- A package for automated processing of single cell RNA-seq data in cancer☆115Aug 27, 2025Updated 5 months ago
- Code repository for single cell RNA-seq☆40Oct 12, 2020Updated 5 years ago
- ☆57Feb 23, 2024Updated last year
- Use batch balanced KNN (BBKNN) in R☆13Sep 9, 2025Updated 5 months ago
- Spatial Tumor Microenvironment (SpatialTME) database is a comprehensive database designed for characterize tumor spatial microenvironment…☆12Dec 4, 2023Updated 2 years ago
- ☆15Apr 26, 2022Updated 3 years ago
- ☆10Jul 9, 2024Updated last year
- ☆24Oct 31, 2024Updated last year
- Pan-Cancer Single Cell Classifier☆83May 30, 2024Updated last year