A Tidy Framework to Hack Gene Expression Signatures
☆21Apr 20, 2025Updated last year
Alternatives and similar repositories for hacksig
Users that are interested in hacksig are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆10Jan 21, 2023Updated 3 years ago
- Creating analytic cohorts from AACR Project GENIE BPC clinically annotated genomic data☆10Jul 2, 2026Updated 3 weeks ago
- ☆16Nov 3, 2023Updated 2 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Dec 8, 2020Updated 5 years ago
- Fork of https://bitbucket.org/mcgranahanlab/lohhla☆18Feb 19, 2020Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆15Dec 21, 2022Updated 3 years ago
- Pipeline for generating RNAseq-based cancer patient reports☆14Jul 12, 2026Updated last week
- Rocking R at UMCCR☆10Oct 11, 2020Updated 5 years ago
- ☆23May 28, 2026Updated last month
- Code, data and analysis for moslin.☆15Oct 7, 2024Updated last year
- Tools for assessing clustering robustness☆32Updated this week
- Generate Novel Insights from Gene Correlation Data☆14Jun 27, 2022Updated 4 years ago
- SCelVis - web-based visualization of single-cell data. Demo☆22Mar 20, 2024Updated 2 years ago
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆26Feb 8, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A light weight shiny based web app to access TCGA data☆15Apr 29, 2015Updated 11 years ago
- Critical downstream analysis steps for single-cell RNA sequencing data☆13Feb 21, 2021Updated 5 years ago
- Calculating Tumor microenvironment score☆29Jan 20, 2023Updated 3 years ago
- FitDevo: accurate inference of single-cell developmental potential using sample-specific gene weight☆18Apr 7, 2024Updated 2 years ago
- CALDER (Cancer Analysis of Longitudinal Data through Evolutionary Reconstruction) reconstructs evolutionary trees from longitudinal bulk …☆15Nov 28, 2023Updated 2 years ago
- SpaceX: Gene Co-expression Network Estimation for Spatial Transcriptomics☆20Apr 5, 2023Updated 3 years ago
- Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.☆118Sep 2, 2024Updated last year
- R package containing useful functions for mutational signature analysis☆87Updated this week
- Scripts used for the ACT paper☆12May 6, 2021Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Pipeline for the identification of cancer-related mutations from RNA-seq data☆14Aug 17, 2021Updated 4 years ago
- PAnno is a Pharmacogenomics Annotation tool for clinical genomic testing.☆18Dec 28, 2022Updated 3 years ago
- Framework for systematic discovery of novel complexes and differential analysis of cofractionation MS datasets☆14Nov 21, 2025Updated 8 months ago
- Flexible and efficient tests for evidence of positive selection anywhere in the cancer genome.☆27Jul 30, 2022Updated 3 years ago
- epigenome analysis to rank transcription factors☆15Dec 19, 2019Updated 6 years ago
- Issue tracker for the Open Targets Platform☆13Jul 8, 2025Updated last year
- Pan-cancer quantification of neoantigen-mediated immunoediting in cancer evolution☆14May 4, 2022Updated 4 years ago
- LARIS enables accurate and efficient ligand and receptor interaction analysis in spatial transcriptomics☆16Feb 26, 2026Updated 4 months ago
- Compressed Graph Representation for Scalable Molecular Graph Generation☆11Sep 24, 2020Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Code for spatial subclone paper☆18Jan 23, 2025Updated last year
- ☆15Oct 24, 2025Updated 9 months ago
- Modular & interactive analysis components for bioinformatics☆18Dec 9, 2025Updated 7 months ago
- Mutational signature analysis for low statistics SNV data☆66Aug 7, 2024Updated last year
- Integrating long read sequencing enhances short read-based locus-specific transposable element quantification☆12May 12, 2025Updated last year
- A computational tool for identification of 3D multi-modal spatial neighborhoods☆16Aug 1, 2025Updated 11 months ago
- nextNEOpi: a comprehensive pipeline for computational neoantigen prediction☆93Jun 6, 2025Updated last year