Acare / hacksig
A Tidy Framework to Hack Gene Expression Signatures
☆19Updated 2 years ago
Alternatives and similar repositories for hacksig:
Users that are interested in hacksig are comparing it to the libraries listed below
- Flexible, probablistic metrics for quality control of scRNA-seq data☆19Updated 2 years ago
- Supporting material for publication: "Ovarian cancer mutational processes drive site-specific immune evasion"☆21Updated last year
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆26Updated 4 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆15Updated 3 years ago
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- Testing a neutral evolution model on cancer sequencing data☆10Updated 4 years ago
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆21Updated 7 months ago
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 5 years ago
- ☆22Updated 2 years ago
- CellRegMap: A statistical framework for mapping context-specific regulatory variants using scRNA-seq☆21Updated 6 months ago
- Code to reproduce TNBC analysis and figures☆23Updated 2 years ago
- R package for gene selection using k-NN graphs.☆13Updated last year
- ☆12Updated 9 months ago
- GLASS consortium☆13Updated 2 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- A gene expression signature scoring Python package.☆12Updated 2 months ago
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆31Updated 3 years ago
- ☆20Updated 3 months ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆25Updated last year
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆15Updated 6 months ago
- Marker gene selection from scRNA-seq data☆15Updated 4 years ago
- Pipeline for the identification of cancer-related mutations from RNA-seq data☆13Updated 3 years ago
- Pairwise Hierarchical Model☆17Updated 2 years ago
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 2 years ago
- ☆35Updated 7 months ago
- ConsensusTME Gene Sets and R Script☆39Updated 8 months ago
- Inferring gene co-expression networks from single cell gene expression data☆24Updated 2 years ago
- ☆12Updated 5 years ago
- Explore the cancer relevance of your gene list☆49Updated 5 months ago
- R package for SIGMA, a clusterability measure for scRNA-seq data☆12Updated 3 years ago