☆19Feb 20, 2018Updated 8 years ago
Alternatives and similar repositories for INTEGRATE-Neo
Users that are interested in INTEGRATE-Neo are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆52Sep 12, 2019Updated 7 years ago
- ☆16May 8, 2023Updated 3 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆29Feb 12, 2021Updated 5 years ago
- Software for processing molecular barcoding (UMI)-based NGS data☆10May 22, 2020Updated 6 years ago
- CWL implementation of CloudNeo: A cloud pipeline for identifying patient-specific tumor neoantigens☆19Apr 19, 2019Updated 7 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆29Aug 10, 2021Updated 5 years ago
- DEPRECATED. This tool has been superseded by https://github.com/griffithlab/pVACtools☆60Apr 16, 2019Updated 7 years ago
- Microsatellite Instability (MSI) detection using high-throughput sequencing data.☆119Apr 2, 2025Updated last year
- ☆13Aug 14, 2020Updated 6 years ago
- A pipeline for identifying indel derived neoantigens using RNA-Seq data☆30Jul 17, 2026Updated 3 months ago
- BISulfite-seq CUI Toolkit☆29Oct 5, 2026Updated 3 weeks ago
- A novel PSSM based software for predicting class I peptide-HLA binding affinity☆16Feb 24, 2017Updated 9 years ago
- Python function for TMB snake plots☆16Feb 12, 2026Updated 8 months ago
- Calls somatic SNVs, indels, and allelic copy number jointly across multiple samples from the same patient. These can be standard tumor/n…☆10Oct 29, 2020Updated 6 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Immune deconvolution of publicly available TCGA expression data☆11Jan 28, 2019Updated 7 years ago
- CellReasoner: A reasoning-enhanced large language model for cell type annotation☆10Oct 1, 2025Updated last year
- FLT3-ITD script based on in-silico extension and clustering☆14Jun 9, 2021Updated 5 years ago
- Papillomavirus genome annotation tool☆10May 2, 2023Updated 3 years ago
- pTuneos: prioritizing Tumor neoantigen from next-generation sequencing data☆39Nov 14, 2021Updated 4 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆32Jul 27, 2023Updated 3 years ago
- Important papers relating to the biology of cell free DNA☆19Sep 21, 2018Updated 8 years ago
- A framework to infer mutational signatures in cancer over time☆57Jul 9, 2019Updated 7 years ago
- Concordance and contamination estimator for tumor–normal pairs☆60Oct 22, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- MHC class II binding prediction☆16Dec 27, 2022Updated 3 years ago
- Deconvolve individual immune cell types from cancer data☆10Apr 29, 2017Updated 9 years ago
- Gene fusion detection and visualization☆133Feb 21, 2022Updated 4 years ago
- Processing and analysis of data coming from Illumina sequencing machines☆11Oct 13, 2026Updated 2 weeks ago
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆15Feb 27, 2019Updated 7 years ago
- ☆191Oct 19, 2026Updated last week
- Mapping pipeline☆10Sep 6, 2019Updated 7 years ago
- ☆10Oct 13, 2026Updated 2 weeks ago
- ⛏ HLA predictions from NGS shotgun data☆58Sep 3, 2026Updated last month
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Msuite2: integrated DNA methylation data analysis toolkit with enhanced performance☆10Jan 21, 2025Updated last year
- An R package for inferring the subclonal architecture of tumors☆125Mar 15, 2026Updated 7 months ago
- xHLA: Fast and accurate HLA typing from short read sequence data☆118Oct 13, 2023Updated 3 years ago
- Ranked vaccine peptides for personalized cancer immunotherapy☆68Updated this week
- Clonality Inference in Multiple Tumor Samples using Phylogeny☆15May 8, 2015Updated 11 years ago
- runjob is a program for managing a group of related jobs running on a compute cluster☆11Jul 26, 2026Updated 3 months ago
- A deep learning approach for predicting high-confidence neoantigens by considering both the presentation possibilities of mutant peptides…☆46Mar 25, 2023Updated 3 years ago