ChrisMaherLab / INTEGRATE-NeoLinks
☆19Updated 7 years ago
Alternatives and similar repositories for INTEGRATE-Neo
Users that are interested in INTEGRATE-Neo are comparing it to the libraries listed below
Sorting:
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆29Updated 4 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- ☆16Updated 2 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- cnv-seq with custom bugfix☆10Updated 12 years ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆52Updated 6 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 6 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated 2 years ago
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆18Updated 6 years ago
- Fork of the Polysolver project☆33Updated 6 years ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆62Updated 2 months ago
- Fork of https://bitbucket.org/mcgranahanlab/lohhla☆18Updated 5 years ago
- Long read to rMATS☆32Updated 2 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆30Updated 8 months ago
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- Clonality Inference in Multiple Tumor Samples using Phylogeny☆15Updated 10 years ago
- Filters for false-positive mutation calls in NGS☆34Updated 6 years ago
- Workflow for Sequenza, cellularity and ploidy☆25Updated 3 months ago
- ☆20Updated 6 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Updated last year
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆34Updated 2 months ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 7 years ago
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Updated 5 years ago
- High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants☆22Updated 5 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated 2 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated 2 years ago
- ☆12Updated 2 years ago
- Scripts involved in our workflow for detecting CNVs from WGS data using read depth-based methods☆46Updated 3 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 7 years ago
- Python package to annotate and visualize gene fusions.☆65Updated last year