Single-Cell-Genomics-Group-CNAG-CRG / TonsilAtlasLinks
Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)
☆28Updated 4 months ago
Alternatives and similar repositories for TonsilAtlas
Users that are interested in TonsilAtlas are comparing it to the libraries listed below
Sorting:
- Functions for single cell data analysis☆32Updated 4 years ago
- Collection of scripts for analysis of pan fetal immune atlas☆26Updated 2 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆37Updated 4 years ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 5 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆65Updated 7 months ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated 7 months ago
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆22Updated last year
- MultiK is a data-driven tool that objectively assesses the optimal number(s) of clusters based on the concept of consensus clustering via…☆22Updated last year
- ☆51Updated 8 months ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆25Updated 3 months ago
- Single cell RNA-seq analysis bundle☆34Updated 5 years ago
- Estimation of Single-Cell Potency with Single Cell Entropy☆40Updated 2 years ago
- Spatial transcriptomics of heart tissue☆21Updated 2 years ago
- Code for single-cell eQTL analysis of memory T cell data in Nathan, et al. bioRxiv (2021)☆19Updated last year
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆11Updated 7 months ago
- Patho-DBiT is a platform to spatially decode RNA Biology in archival FFPE tissues.☆11Updated 9 months ago
- Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)☆16Updated last year
- ☆28Updated 3 months ago
- Inferring CNV data from single cell ATAC seq☆23Updated last year
- Functional Inference of Gene Regulation☆44Updated 10 months ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆52Updated last month
- ☆15Updated last year
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated last month
- Integration of gut cell atlases☆25Updated 3 months ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated 11 months ago
- ☆32Updated 4 months ago
- Whole mouse brain snATAC seq analysis☆25Updated last month
- Scripts used to perform the analyses to study the Biology of Myeloid Cells in Glioma Microenvironments☆17Updated 2 weeks ago
- Single-Cell Inference of Class Switch Recombination☆19Updated 2 months ago
- ☆41Updated 4 years ago