Single-Cell-Genomics-Group-CNAG-CRG / TonsilAtlasLinks
Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)
☆28Updated 6 months ago
Alternatives and similar repositories for TonsilAtlas
Users that are interested in TonsilAtlas are comparing it to the libraries listed below
Sorting:
- Aligning gene expression trajectories of single-cell reference and query systems☆68Updated 8 months ago
- ☆54Updated 2 weeks ago
- Estimation of Single-Cell Potency with Single Cell Entropy☆41Updated 2 years ago
- Collection of scripts for analysis of pan fetal immune atlas☆27Updated 2 years ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆54Updated 2 months ago
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆22Updated last year
- ☆10Updated 2 years ago
- Single-Cell Inference of Class Switch Recombination☆19Updated 3 months ago
- ☆30Updated 4 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 7 months ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated 8 months ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆39Updated 3 years ago
- Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolu…☆56Updated 2 years ago
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆11Updated 9 months ago
- Functions for single cell data analysis☆32Updated 4 years ago
- Unsupervised Inference of Developmental Directions for Single Cells☆22Updated last year
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆37Updated 4 years ago
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆74Updated 2 years ago
- Single cell RNA-seq analysis bundle☆35Updated 5 years ago
- MultiK is a data-driven tool that objectively assesses the optimal number(s) of clusters based on the concept of consensus clustering via…☆22Updated last year
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆26Updated 4 months ago
- Analysis of cell-cell communication at single-cell resolution☆101Updated 10 months ago
- ☆25Updated last month
- Spatial transcriptomics of heart tissue☆22Updated 3 years ago
- Repository to store code used for the analyses presented in "Defining the Regulatory Logic of Breast Cancer Using Single-Cell Epigenetic …☆17Updated last month
- Draw phylogenetic trees of tumor evolution☆80Updated last year
- ☆37Updated 2 years ago
- Functional Inference of Gene Regulation☆45Updated last year
- ☆44Updated 11 months ago
- Accurate and fast cell marker gene identification with COSG☆46Updated 3 months ago