Alternatives and similar repositories for EpiAgent

Users that are interested in EpiAgent are comparing it to the libraries listed below

• SuperBianC / scMulan
  Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.
  ☆61Updated last year
• GET-Foundation / get_model
  A modular framework for multimodal cross-cell-type transcriptional regulation models
  ☆100Updated 5 months ago
• madilabcode / scNET
  ☆59Updated last week
• biomed-AI / CellFM
  ☆93Updated 5 months ago
• siyuh / Squidiff
  ☆114Updated this week
• clinicalml / sc-foundation-eval
  Code for evaluating single cell foundation models scBERT and scGPT
  ☆46Updated last year
• sanderlab / scPerturb
  scPerturb: A resource and a python/R tool for single-cell perturbation data
  ☆164Updated 11 months ago
• calico / scBasset
  Sequence-based Modeling of single-cell ATAC-seq using Convolutional Neural Networks.
  ☆100Updated 4 months ago
• TencentAILabHealthcare / scTranslator
  ☆83Updated 5 months ago
• Durenlab / LINGER
  ☆123Updated 8 months ago
• SONGDONGYUAN1994 / scDesign3
  scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics
  ☆112Updated 4 months ago
• JackieHanLab / TOSICA
  Transformer for One-Stop Interpretable Cell-type Annotation
  ☆146Updated last year
• HelloWorldLTY / UKBioLM
  ☆22Updated 3 weeks ago
• mcgilldinglab / UNAGI
  UNAGI: deep generative AI for virtual disease and unsuperivsed in-silico perturbations.
  ☆49Updated last week
• STOmics / StereoMMv1
  StereoMM is a graph fusion model that can integrate gene expression, histological images, and spatial location. And the information inter…
  ☆38Updated last month
• xCompass-AI / GeneCompass
  GeneCompass
  ☆109Updated last month
• cantinilab / scPRINT
  🏃 The go-to single-cell Foundation Model
  ☆135Updated last month
• yutongo / TIGON
  ☆51Updated 10 months ago
• Lotfollahi-lab / nichecompass
  End-to-end analysis of spatial multi-omics data
  ☆102Updated this week
• nitzanlab / biolord
  ☆90Updated last year
• GuangyuWangLab2021 / cellDancer
  Predict RNA velocity through deep learning
  ☆72Updated 2 years ago
• theislab / nicheformer
  Repository for Nicheformer: a foundation model for single-cell and spatial omics
  ☆149Updated 2 months ago
• theislab / scib-reproducibility
  Additional code and analysis from the single-cell integration benchmarking project
  ☆71Updated 3 years ago
• mlbio-epfl / systema
  ☆51Updated 2 weeks ago
• mcgilldinglab / scSemiProfiler
  A computational method scSemiProfiler that provides affordable single-cell data for large-scale disease cohorts using deep generative mod…
  ☆26Updated 7 months ago
• bm2-lab / scPerturBench
  Single-cell perturbation effects prediction benchmark
  ☆53Updated 3 weeks ago
• UCSC-VLAA / EpiFoundation
  Pytorch implementation of EpiFoundation
  ☆25Updated 11 months ago
• SydneyBioX / scJoint
  ☆62Updated 2 years ago
• lanagarmire / Asgard
  ☆45Updated 2 years ago
• snap-stanford / SATURN
  ☆154Updated last year