jsxlei / scCLIP

Related projects: ⓘ

• OmicsML / CellPLM
  Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.
  ☆61Updated 5 months ago
• QSong-github / SiGra
  Single-cell spatial elucidation through image-augmented graph transformer
  ☆29Updated last year
• HelloWorldLTY / scEval
  Codes for paper: Evaluating the Utilities of Large Language Models in Single-cell Data Analysis.
  ☆45Updated 3 weeks ago
• TencentAILabHealthcare / scPROTEIN
  ☆44Updated 7 months ago
• PharMolix / LangCell
  Code for "LangCell: Language-Cell Pre-training for Cell Identity Understanding".
  ☆36Updated 3 months ago
• vandijklab / cell2sentence-ft
  Cell2Sentence turns scRNA-seq data into text for LLM training.
  ☆82Updated 2 weeks ago
• caokai1073 / uniPort
  a unified single-cell data integration framework by optimal transport
  ☆30Updated last year
• OmicsML / awesome-foundation-model-single-cell-papers
  ☆129Updated last month
• EperLuo / scDiffusion
  A model developed for the generation of scRNA-seq data
  ☆27Updated last week
• clinicalml / sc-foundation-eval
  Code for evaluating single cell foundation models scBERT and scGPT
  ☆30Updated 3 weeks ago
• yhchen1123 / CoGO
  CoGO: a contrastive learning framework to predict disease similarity based on gene network and ontology structure
  ☆16Updated 2 years ago
• OmicsML / scDiff
  scDiff: A General Single-Cell Analysis Framework via Conditional Diffusion Generative Models
  ☆22Updated last month
• theislab / nicheformer
  Repository for Nicheformer: a foundation model for single-cell and spatial omics
  ☆50Updated 4 months ago
• OSU-BMBL / deepmaps
  Single-cell biological network inference using a heterogeneous graph transformer
  ☆63Updated 10 months ago
• yhr91 / GEARS_misc
  ☆15Updated 8 months ago
• OmicsML / scMoFormer
  Single-Cell Multimodal Prediction via Transformer
  ☆21Updated 7 months ago
• OSU-BMBL / marsgt
  Multi-omics data analysis for rare population inference using single-cell graph transformer
  ☆13Updated 4 months ago
• kodaim1115 / scMM
  ☆17Updated 3 years ago
• kimmo1019 / JAE
  Single cell joint embedding and modality prediction with autoencoder
  ☆9Updated 2 years ago
• hui2000ji / scETM
  A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.
  ☆48Updated 2 years ago
• rsinghlab / scNODE
  scNODE: Generative Model for Temporal Single Cell Transcriptomic Data Prediction
  ☆12Updated 5 months ago
• JackieHanLab / TOSICA
  Transformer for One-Stop Interpretable Cell-type Annotation
  ☆126Updated 6 months ago
• zhanglab-wbgcas / STGRNS
  ☆27Updated last year
• melobio / Concerto-reproducibility
  ☆36Updated last year
• ys-zong / conST
  conST: an interpretable multi-modal contrastive learning framework for spatial transcriptomics
  ☆22Updated 7 months ago
• JiangBioLab / DeepST
  Identify spatial domain
  ☆54Updated last year
• HelloWorldLTY / scELMo
  Codes for paper: scELMo: Embeddings from Language Models are Good Learners for Single-cell Data Analysis
  ☆11Updated last month
• xiaoyeye / CCST
  Cell clustering for spatial transcriptomics data with graph neural network
  ☆55Updated last year
• rahuldhodapkar / cell2sentence
  Create cell sentences from sequencing data
  ☆21Updated last month
• jkobject / geneformer
  ☆25Updated 9 months ago