☆35Feb 21, 2024Updated 2 years ago
Alternatives and similar repositories for scCLIP
Users that are interested in scCLIP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Supervised cell type identification for scATAC-seq data☆15Aug 23, 2023Updated 3 years ago
- ☆27Sep 26, 2024Updated last year
- A method for calculating single cell entropy and reconstructing cell differentiation lineage using single-cell RNA-seq data☆10May 26, 2023Updated 3 years ago
- Official implementation of JAMIE, Joint variational Autoencoders for Multimodal Imputation and Embedding☆17Sep 11, 2025Updated 11 months ago
- ☆21Jul 30, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A foundation model for single-cell epigenomic data☆71Jun 3, 2026Updated 2 months ago
- Pytorch implementation of EpiFoundation☆26Feb 25, 2025Updated last year
- Deep Large-Scale Inference UsingKnockoffs☆11Nov 4, 2021Updated 4 years ago
- SINCERITIES is a tool for inferring gene regulatory networks from time-stamped cross-sectional single cell transcriptional expression pro…☆15Oct 16, 2017Updated 8 years ago
- [NPJ AI] A foundation model for individual genome modelling☆29May 9, 2026Updated 3 months ago
- Diffusion Model for Single-Cell Multiome Data Generation and Analysis☆42May 19, 2026Updated 3 months ago
- Generative Pretraining from Transcriptomes☆17Feb 6, 2023Updated 3 years ago
- ☆53Mar 31, 2024Updated 2 years ago
- ☆23May 2, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆72Nov 6, 2024Updated last year
- Evaluating genomic sequence models for explaining personalized expression variation☆20Dec 6, 2023Updated 2 years ago
- ☆40Apr 16, 2025Updated last year
- Probabilistic pseudotime for single-cell RNA-seq data☆11Oct 6, 2017Updated 8 years ago
- A versatile single-cell cross-modality translation method via dual-aligned variational autoencoders☆30Jul 1, 2024Updated 2 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Apr 19, 2021Updated 5 years ago
- ☆20Updated this week
- ☆19Jul 10, 2025Updated last year
- Multi-omics data analysis for rare population inference using single-cell graph transformer☆23Nov 5, 2025Updated 9 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- XL-mHG: A Semiparametric Test for Enrichment in Ranked Lists.☆13Jan 19, 2023Updated 3 years ago
- ☆22Jun 17, 2024Updated 2 years ago
- [Nature Communications] A foundation model for drug synergy analysis☆15Nov 17, 2025Updated 9 months ago
- ☆14Mar 11, 2025Updated last year
- Official pytorch implementation of Spatial Relation Decomposition method (AAAI 23)☆23Dec 29, 2023Updated 2 years ago
- ☆1,620Apr 29, 2026Updated 4 months ago
- ☆19Jul 30, 2022Updated 4 years ago
- Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds☆12Mar 21, 2019Updated 7 years ago
- ☆10Jun 16, 2022Updated 4 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆55Mar 4, 2025Updated last year
- Code for EMNLP2023 paper "MolCA: Molecular Graph-Language Modeling with Cross-Modal Projector and Uni-Modal Adapter".☆13Dec 27, 2023Updated 2 years ago
- An R package for fast topic inference to identify tissue architecture in multiplexed images☆18Jun 5, 2026Updated 2 months ago
- ☆68Jul 13, 2023Updated 3 years ago
- A modular framework for multimodal cross-cell-type transcriptional regulation models☆113Apr 7, 2026Updated 4 months ago
- Calibrated clustering with artificial variables to avoid over-clustering in single-cell RNA-sequencing☆21Nov 18, 2025Updated 9 months ago
- ☆12Dec 13, 2023Updated 2 years ago