martinjzhang / scDRSLinks
Single-cell disease relevance score (scDRS)
☆146Updated 9 months ago
Alternatives and similar repositories for scDRS
Users that are interested in scDRS are comparing it to the libraries listed below
Sorting:
- AUCell: score single cells with gene regulatory networks☆160Updated last year
- Single-nuclei RNA-seq and ATAC-seq in Alzheimer's disease☆95Updated 4 years ago
- scDIOR: Single cell data IO softwaRe☆144Updated 3 years ago
- Methods to discover gene programs on single-cell data☆140Updated 3 weeks ago
- A Bayesian model for compositional single-cell data analysis☆170Updated 2 years ago
- In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes☆109Updated 6 months ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆150Updated 6 months ago
- Methods to compute Local Inverse Simpson's Index (LISI)☆67Updated 3 years ago
- Analysis of cell-cell communication at single-cell resolution☆103Updated 10 months ago
- The integration of single cell rank-based gene set enrichment analysis☆128Updated 3 weeks ago
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆157Updated 4 months ago
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆76Updated last week
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆107Updated 3 months ago
- ☆124Updated 3 years ago
- trajectory inference☆104Updated 6 months ago
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆124Updated last year
- Direct estimation of mean and covariance from single cell RNA seq experiments☆112Updated 2 months ago
- Data processing and analysis related code associated with the study "A single-cell and spatially resolved atlas of human breast cancers".☆117Updated 10 months ago
- Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis☆63Updated last year
- CELLECT (CELL-type Expression-specific integration for Complex Traits)☆85Updated 11 months ago
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆76Updated 3 months ago
- A Fully Bayesian Inference of Tumor Microenvironment composition and gene expression☆200Updated 2 months ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆120Updated last week
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆119Updated 10 months ago
- Multiome GRN inference.☆124Updated last year
- Significance analysis for clustering single-cell RNA-sequencing data☆117Updated 10 months ago
- Cell type prioritization in single-cell data☆122Updated 9 months ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆70Updated last week
- ☆123Updated last year
- Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data☆138Updated last month