Alternatives and similar repositories for scDRS

Users that are interested in scDRS are comparing it to the libraries listed below

• aertslab / AUCell
  AUCell: score single cells with gene regulatory networks
  ☆171Updated last year
• YosefLab / Compass
  In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes
  ☆117Updated last week
• igrabski / sc-SHC
  Significance analysis for clustering single-cell RNA-sequencing data
  ☆119Updated last year
• saeyslab / multinichenetr
  MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…
  ☆166Updated 2 months ago
• theislab / scCODA
  A Bayesian model for compositional single-cell data analysis
  ☆178Updated 2 years ago
• chuiqin / irGSEA
  The integration of single cell rank-based gene set enrichment analysis
  ☆136Updated 3 months ago
• JiekaiLab / scDIOR
  scDIOR: Single cell data IO softwaRe
  ☆148Updated 3 years ago
• naomihabiblab / BEYOND_DLPFC
  Cellular dynamics across aged human brains uncover a multicellular cascade leading to Alzheimer’s disease
  ☆61Updated 10 months ago
• carmonalab / GeneNMF
  Methods to discover gene programs on single-cell data
  ☆155Updated last month
• carmonalab / UCell
  Gene set scoring for single-cell data
  ☆166Updated 3 weeks ago
• perslab / CELLECT
  CELLECT (CELL-type Expression-specific integration for Complex Traits)
  ☆90Updated last year
• neurorestore / Libra
  ☆177Updated 5 months ago
• AntonioDeFalco / SCEVAN
  R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …
  ☆113Updated 2 months ago
• swaruplab / Single-nuclei-epigenomic-and-transcriptomic-landscape-in-Alzheimer-disease
  Single-nuclei RNA-seq and ATAC-seq in Alzheimer's disease
  ☆96Updated 4 years ago
• neurorestore / Augur
  Cell type prioritization in single-cell data
  ☆125Updated last year
• changwn / scFEA
  single cell Flux Estimation Analysis (scFEA) Try the below web server!
  ☆133Updated last year
• yelabucsf / scrna-parameter-estimation
  Direct estimation of mean and covariance from single cell RNA seq experiments
  ☆120Updated 5 months ago
• BlishLab / scriabin
  Analysis of cell-cell communication at single-cell resolution
  ☆104Updated last year
• quadbio / Pando
  Multiome GRN inference.
  ☆128Updated last year
• RausellLab / CelliD
  Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.
  ☆95Updated last year
• navinlabcode / CellTrek
  ☆125Updated 3 years ago
• immunogenomics / LISI
  Methods to compute Local Inverse Simpson's Index (LISI)
  ☆70Updated 4 years ago
• Japrin / STARTRAC
  STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)
  ☆110Updated 6 months ago
• digitalcytometry / cytotrace2
  CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.
  ☆175Updated this week
• Danko-Lab / BayesPrism
  A Fully Bayesian Inference of Tumor Microenvironment composition and gene expression
  ☆209Updated 5 months ago
• cortes-ciriano-lab / SComatic
  A tool for detecting somatic variants in single cell data
  ☆215Updated last year
• immunogenomics / symphony
  Efficient and precise single-cell reference atlas mapping with Symphony
  ☆111Updated 2 years ago
• cellgeni / schard
  reticulate-free single cell format conversion
  ☆191Updated last month
• zhengrongbin / MEBOCOST
  A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data
  ☆79Updated 3 months ago
• aertslab / pycisTopic
  pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.
  ☆76Updated last month