Alternatives and similar repositories for snapseed

Users that are interested in snapseed are comparing it to the libraries listed below

• kharchenkolab / scITD
  Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition
  ☆61Updated last year
• KlugerLab / GeneTrajectory
  R implementation of GeneTrajectory
  ☆65Updated last year
• jaleesr / SenePy
  SenePy is a set of tools to score single-cells based on their expression of cell-specific senescence markers. Please see the following pu…
  ☆44Updated 8 months ago
• Banovich-Lab / Spatial_PF
  ☆31Updated 3 months ago
• hernet / transcriptional-map-nk
  We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…
  ☆13Updated last year
• raphael-group / CalicoST
  Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics
  ☆41Updated 2 months ago
• mcgilldinglab / scSemiProfiler
  A computational method scSemiProfiler that provides affordable single-cell data for large-scale disease cohorts using deep generative mod…
  ☆25Updated 4 months ago
• PeterZZQ / CellPath
  ☆20Updated 3 years ago
• linnarsson-lab / developing-human-brain
  ☆36Updated this week
• StatBiomed / SpatialDM
  Spatial direct messaging detected by bivariate Moran
  ☆30Updated 3 months ago
• rargelaguet / mouse_organogenesis_10x_multiome_publication
  Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""
  ☆40Updated 3 years ago
• simonwm / tacco
  TACCO: Transfer of Annotations to Cells and their COmbinations
  ☆61Updated last month
• yunguan-wang / Spacia
  ☆30Updated 5 months ago
• xiaoyeye / TFvelo
  ☆45Updated last year
• YingMa0107 / IRIS
  Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics
  ☆39Updated 8 months ago
• AllenInstitute / mouse_aging_scRNAseq
  analysis scripts related to Jin et al manuscript on scRNA seq in aging mouse brain
  ☆19Updated last year
• GreenleafLab / brainchromatin
  Code used to analyze single cell RNA and ATAC sequencing in developing human brain
  ☆33Updated 3 years ago
• wanglab-broad / CAST
  CAST package
  ☆40Updated 11 months ago
• AllenInstitute / scrattch.bigcat
  iterative clustering pipeline of big single cell datasets.
  ☆34Updated last month
• snehamitra / SCARlink
  ☆59Updated 4 months ago
• Teichlab / HCA_Heart_ver2
  ☆40Updated 2 years ago
• Teichlab / drug2cell
  Gene group activity utility functions for Scanpy
  ☆93Updated 10 months ago
• bioinfo-biols / SEVtras
  sEV-containing droplet identification in scRNA-seq data (SEVtras)
  ☆26Updated 8 months ago
• wallet-maker / cytopus
  Single cell omics biology annotations
  ☆51Updated 6 months ago
• Teichlab / snp2cell
  cell type specific, trait-associated gene regulation
  ☆29Updated 6 months ago
• msraredon / NICHES
  Niche Interactions and Cellular Heterogeneity in Extracellular Signaling
  ☆56Updated 5 months ago
• HectorRDB / condiments
  Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression
  ☆29Updated 10 months ago
• LungCellAtlas / HLCA_reproducibility
  This repository contains all code used for the Human Lung Cell Atlas project.
  ☆56Updated 2 years ago
• KChen-lab / bindSC
  Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…
  ☆36Updated 2 years ago
• KlugerLab / GeneTrajectory-python
  Python implementation of Gene Trajectory
  ☆28Updated last year