devsystemslab / snapseed
☆14Updated last week
Alternatives and similar repositories for snapseed:
Users that are interested in snapseed are comparing it to the libraries listed below
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆53Updated 2 weeks ago
- VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps☆46Updated last year
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- iterative clustering pipeline of big single cell datasets.☆29Updated 2 months ago
- CAST package☆33Updated 5 months ago
- ☆31Updated 7 months ago
- Single cell RNA-seq analysis for transcriptomic type characterization☆36Updated this week
- ☆21Updated 2 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆48Updated this week
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆33Updated 3 years ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆59Updated 10 months ago
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆46Updated 2 months ago
- R implementation of GeneTrajectory☆58Updated last year
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆33Updated this week
- Multi-resolution Variational Inference☆22Updated last week
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆31Updated last year
- ☆20Updated last week
- ☆16Updated 8 months ago
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆25Updated 8 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆61Updated 11 months ago
- Spatial direct messaging detected by bivariate Moran☆26Updated 2 months ago
- A python implementation of scran computeSumFactors: normalization by deconvolution for single-cell RNA-sequencing☆34Updated last year
- .h5mu files interface for Seurat☆29Updated last year
- Python implementation of Gene Trajectory☆25Updated 7 months ago
- Single cell omics biology annotations☆51Updated last month
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆24Updated 2 years ago
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆34Updated last year
- Gene expression deconvolution using dampened weighted least squares☆27Updated 4 years ago
- Collection of computational tools for cell-cell communication inference for single-cell and spatially resolved omics☆44Updated last month
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆71Updated 3 weeks ago