Python client for the OmniPath web service
☆60Feb 19, 2026Updated 2 months ago
Alternatives and similar repositories for omnipath
Users that are interested in omnipath are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotat…☆162Updated this week
- ☆15Jun 27, 2025Updated 10 months ago
- Dorothea package in Python☆11Apr 5, 2022Updated 4 years ago
- Spacewalk is an application for displaying and interacting with super-resolution chromatin tracing data in 3D. SpaceWalk includes igv.js …☆12Nov 8, 2025Updated 5 months ago
- scDoRI (single-cell Deep multi-Omic Regulatory Inference) is a deep learning model to infer enhancer-mediated gene regulatory networks (e…☆31Aug 20, 2025Updated 8 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Identification of clone-specific and cancer-selective multi-targeting therapeutic options based on single-cell transcriptomic profiles of…☆22Feb 20, 2025Updated last year
- Tutorials for Squidpy☆34Dec 18, 2025Updated 4 months ago
- LIANA+: an all-in-one framework for cell-cell communication☆284Jan 24, 2026Updated 3 months ago
- Web application demonstrating 3D modeling of spatial transcriptomics☆24Dec 9, 2024Updated last year
- Alignment of spatial genomics data using deep Gaussian processes☆31Dec 14, 2022Updated 3 years ago
- Simple scVI implementation☆12Apr 27, 2026Updated last week
- Variational Estimation of Latent Velocity from Expression with Time-resolution☆13May 30, 2024Updated last year
- Powerful and lightweight package to identify tissue compartments in spatial transcriptomics datasets.☆19Jun 9, 2025Updated 10 months ago
- Single-cell perturbation analysis☆309Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Shell bootloader for data science.☆10Updated this week
- ☆96Aug 12, 2024Updated last year
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆69Mar 17, 2026Updated last month
- Python package for access to online biomedical resources, usually via REST APIs.☆19Updated this week
- ☆62Jan 14, 2026Updated 3 months ago
- NetworkCommons is a community-driven platform designed to simplify access to tools and resources for inferring context-specific protein i…☆34Jul 23, 2025Updated 9 months ago
- Codebase for BioPathNet to predict links in biomedical knowledge graphs☆38Feb 19, 2026Updated 2 months ago
- Split a BAM file by haplotype support☆16Dec 13, 2017Updated 8 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆106May 27, 2025Updated 11 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A modular tool for proportion analysis in single-cell sequencing data☆25Feb 26, 2026Updated 2 months ago
- pyGPCCA - python GPCCA: Generalized Perron Cluster Cluster Analysis package to coarse-grain reversible and non-reversible Markov state mo…☆28Feb 17, 2026Updated 2 months ago
- scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution.☆64Apr 1, 2026Updated last month
- Python package to perform enrichment analysis from omics data.☆267Updated this week
- Package for the analysis of Transcripts outside segmented cells in ST data☆28Apr 27, 2026Updated last week
- R client for the OmniPath web service☆164Apr 29, 2026Updated last week
- Unified knowledge-driven network inference from omics data☆100Feb 27, 2026Updated 2 months ago
- Image processing software for CODEX: driftcompensation, deconvolution, uploading and segmentation☆53May 20, 2022Updated 3 years ago
- Electronic Health Record Analysis with Python.☆346Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- 3D segmentation for cells and organoids of 3D multichannel images☆32Jun 24, 2025Updated 10 months ago
- Spatial reconstruction of dissociated single-cell data☆19Jan 12, 2024Updated 2 years ago
- Cookiecutter template for scverse☆90Apr 28, 2026Updated last week
- Context specific and dynamic gene regulatory network reconstruction and analysis☆128Apr 14, 2026Updated 3 weeks ago
- Learning Single-Cell Perturbation Responses using Neural Optimal Transport☆171Oct 31, 2024Updated last year
- Dynamical systems methods for RNA velocity analysis☆24May 19, 2021Updated 4 years ago
- Open-source data framework for biology. Context and memory for datasets and models at scale. Query, trace & validate with a lineage-nativ…☆260Updated this week