saezlab / omnipathLinks
Python client for the OmniPath web service
☆45Updated last month
Alternatives and similar repositories for omnipath
Users that are interested in omnipath are comparing it to the libraries listed below
Sorting:
- ☆55Updated 3 months ago
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆48Updated 7 months ago
- spatial transcriptome, single cell☆69Updated 2 years ago
- Python implementation of the Slingshot pseudotime algorithm☆62Updated last year
- Context specific and dynamic gene regulatory network reconstruction and analysis☆121Updated last week
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆63Updated 3 weeks ago
- ☆45Updated last month
- ACTIONet single-cell analysis framework☆42Updated 11 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆63Updated last month
- Python implementation of Milo for differential abundance testing on KNN graph☆74Updated 6 months ago
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆26Updated 7 months ago
- Multimodal Data (.h5mu) implementation for Python☆98Updated 2 months ago
- MultiMAP for integration of single cell multi-omics☆56Updated last year
- Quantifying experimental perturbations at single cell resolution☆109Updated 10 months ago
- Unified knowledge-driven network inference from omics data☆72Updated 3 weeks ago
- Non-parametric density inference for single-cell analysis.☆72Updated 3 months ago
- Geometry-preserving random sampling☆89Updated 9 months ago
- ☆59Updated 11 months ago
- Task-based gene regulatory network inference using single-cell or bulk gene expression data conditioned on a prior network.☆53Updated last year
- Benchmark of GRNs using the GRETA pipeline☆27Updated last week
- Single cell omics biology annotations☆51Updated 4 months ago
- Multi-modal single cell analysis pipelines☆59Updated last month
- A python package for chromVAR☆29Updated 2 years ago
- pseudobulking on an AnnData object☆34Updated 5 months ago
- Accelerated, Python-only, single-cell integration benchmarking metrics☆68Updated this week
- Multi-omics factor analysis v2☆48Updated 10 months ago
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆44Updated last week
- Unsupervised Deep Disentangled Representation of Single-Cell Omics☆48Updated last week
- CZ CELLxGENE Discover Census☆106Updated this week
- A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction☆93Updated 3 weeks ago