Alternatives and similar repositories for linear_perturbation_prediction-Paper

Users that are interested in linear_perturbation_prediction-Paper are comparing it to the libraries listed below

• decomverse / ACTIONet
  ACTIONet single-cell analysis framework
  ☆41Updated 8 months ago
• gifford-lab / prescient
  Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.
  ☆47Updated 4 months ago
• theislab / scib-reproducibility
  Additional code and analysis from the single-cell integration benchmarking project
  ☆65Updated 2 years ago
• Teichlab / drug2cell
  Gene group activity utility functions for Scanpy
  ☆76Updated 5 months ago
• wallet-maker / cytopus
  Single cell omics biology annotations
  ☆51Updated last month
• zhouzilu / cTPnet
  cTPnet Package
  ☆25Updated 2 years ago
• altoslabs / perturbench
  ☆26Updated 2 weeks ago
• livnatje / DIALOGUE
  DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…
  ☆110Updated last year
• EngreitzLab / scE2G
  Pipeline to run scE2G
  ☆26Updated last week
• SONGDONGYUAN1994 / scDesign3
  scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics
  ☆95Updated 3 months ago
• zakieh-tayyebi / CellSpace
  Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace
  ☆40Updated 4 months ago
• SchubertLab / mvTCR
  ☆51Updated 7 months ago
• jmschrei / dragonnfruit
  A method for analyzing scATAC-seq experiments.
  ☆30Updated 3 months ago
• cistrome / MIRA
  Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.
  ☆61Updated last year
• Genentech / decima
  Decima is a Python library to train sequence models on single-cell RNA-seq data.
  ☆38Updated last week
• cantinilab / Circe
  Co-accessibility network from single-cell ATAC-seq data. Python code, based on Cicero package (R).
  ☆21Updated last month
• openproblems-bio / openproblems-v2
  Formalizing and benchmarking open problems in single-cell genomics
  ☆56Updated 6 months ago
• emdann / milopy
  Python implementation of Milo for differential abundance testing on KNN graph
  ☆68Updated 3 months ago
• yutongo / TIGON
  ☆42Updated 2 months ago
• YangLabHKUST / Portal
  Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets
  ☆30Updated last year
• rargelaguet / mouse_organogenesis_10x_multiome_publication
  Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""
  ☆40Updated 2 years ago
• theislab / DRVI
  Unsupervised Deep Disentangled Representation of Single-Cell Omics
  ☆44Updated this week
• multitalk / awesome-cell-cell-communication
  Collection of computational tools for cell-cell communication inference for single-cell and spatially resolved omics
  ☆49Updated 3 weeks ago
• ajaynadig / TRADEtools
  ☆23Updated 2 months ago
• KlugerLab / GeneTrajectory
  R implementation of GeneTrajectory
  ☆58Updated last year
• czbiohub-sf / tabula-sapiens
  Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens
  ☆41Updated 2 years ago
• theislab / scTab
  ☆58Updated 8 months ago
• josephreplogle / guide_calling
  Tools for sgRNA calling in direct capture Perturb-seq data
  ☆34Updated last year
• rs239 / velorama
  Gene regulatory network inference for RNA velocity and pseudotime data
  ☆26Updated 2 months ago
• noamteyssier / adpbulk
  pseudobulking on an AnnData object
  ☆32Updated 2 months ago