const-ae / linear_perturbation_prediction-Paper

Related projects ⓘ

Alternatives and complementary repositories for linear_perturbation_prediction-Paper

• wallet-maker / cytopus
  Single cell omics biology annotations
  ☆48Updated last month
• decomverse / ACTIONet
  ACTIONet single-cell analysis framework
  ☆36Updated last month
• MarioniLab / milo_analysis_2020
  Code to reproduce analysis of Milo manuscript
  ☆12Updated 2 years ago
• zakieh-tayyebi / CellSpace
  Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace
  ☆34Updated 8 months ago
• immunogenomics / cna
  Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…
  ☆45Updated 2 weeks ago
• Katsevich-Lab / sceptre
  An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.
  ☆26Updated last month
• jzhoulab / quasildr
  Quasilinear data representations for single-cell omics data analysis
  ☆42Updated last year
• Teichlab / drug2cell
  Gene group activity utility functions for Scanpy
  ☆56Updated 3 months ago
• jmschrei / dragonnfruit
  A method for analyzing scATAC-seq experiments.
  ☆23Updated last month
• rs239 / velorama
  Gene regulatory network inference for RNA velocity and pseudotime data
  ☆22Updated 9 months ago
• SydneyBioX / scClassify
  Hierarchical classification of cells
  ☆22Updated 3 months ago
• MarioniLab / StabMap
  Mosaic single cell data integration using non-overlapping features
  ☆34Updated 2 years ago
• BayraktarLab / cell2fate
  Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.
  ☆36Updated 2 months ago
• kaishumason / NicheDE
  NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.
  ☆14Updated last month
• JEFworks-Lab / CRAWDAD
  Cell-type Relationship Analysis Workflow Done Across Distances
  ☆21Updated last week
• calico / velodyn
  Dynamical systems methods for RNA velocity analysis
  ☆23Updated 3 years ago
• CostaLab / scMEGA
  scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference
  ☆37Updated last month
• zhouzilu / cTPnet
  cTPnet Package
  ☆23Updated 2 years ago
• kkdey / GSSG
  Gene Set + S2G strategy annotations analyzed for disease architecture
  ☆47Updated last year
• jingshuw / SAVERX
  R package for transfer learning of single-cell RNA-seq denoising
  ☆29Updated 2 years ago
• SchubertLab / mvTCR
  ☆45Updated last week
• Janezjz / cellanova
  CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration
  ☆15Updated last week
• AmandaKedaigle / OrganoidAtlas
  Code to go along with https://doi.org/10.1016/j.cell.2022.09.010
  ☆20Updated 2 years ago
• jessemzhang / tn_test
  post-clustering differential expression test
  ☆35Updated 5 years ago
• pachterlab / GFCP_2022
  RNA velocity validation
  ☆23Updated 2 years ago
• aristoteleo / Scribe-py
  Regulatory networks with Direct Information in python
  ☆38Updated last year
• mvinyard / ArchR-h5ad
  Parse ArchR arrow files to anndata h5ad
  ☆14Updated 10 months ago
• Winnie09 / Lamian
  ☆44Updated 3 months ago
• wanglabtongji / CCI
  Evaluation of cell-cell interaction methods by integrating single-cell RNA sequencing data with spatial information
  ☆20Updated 2 years ago
• theislab / scib-reproducibility
  Additional code and analysis from the single-cell integration benchmarking project
  ☆55Updated last year