Alternatives and similar repositories for linear_perturbation_prediction-Paper:

Users that are interested in linear_perturbation_prediction-Paper are comparing it to the libraries listed below

• wallet-maker / cytopus
  Single cell omics biology annotations
  ☆50Updated 2 weeks ago
• zakieh-tayyebi / CellSpace
  Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace
  ☆39Updated 2 months ago
• decomverse / ACTIONet
  ACTIONet single-cell analysis framework
  ☆38Updated 6 months ago
• jmschrei / dragonnfruit
  A method for analyzing scATAC-seq experiments.
  ☆28Updated 3 weeks ago
• SchubertLab / mvTCR
  ☆51Updated 4 months ago
• immunogenomics / cna
  Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…
  ☆48Updated 3 weeks ago
• YosefLab / SymSim
  ☆24Updated 6 months ago
• azizilab / decipher
  A single-cell analysis toolkit to jointly analyze samples from distinct conditions
  ☆29Updated 6 months ago
• Katsevich-Lab / sceptre
  An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.
  ☆26Updated last month
• josephreplogle / guide_calling
  Tools for sgRNA calling in direct capture Perturb-seq data
  ☆32Updated last year
• zhouzilu / cTPnet
  cTPnet Package
  ☆25Updated 2 years ago
• cistrome / MIRA
  Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.
  ☆61Updated 11 months ago
• EngreitzLab / scE2G
  Pipeline to run scE2G
  ☆20Updated this week
• brianhie / geosketch
  Geometry-preserving random sampling
  ☆80Updated 4 months ago
• Teichlab / drug2cell
  Gene group activity utility functions for Scanpy
  ☆71Updated 3 months ago
• lingfeiwang / normalisr
  Causal inference, differential expression, and co-expression for scRNA-seq
  ☆18Updated 3 years ago
• rargelaguet / mouse_organogenesis_10x_multiome_publication
  Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""
  ☆40Updated 2 years ago
• kaishumason / NicheDE
  NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.
  ☆17Updated 5 months ago
• gifford-lab / prescient
  Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.
  ☆46Updated 2 months ago
• pachterlab / GFCP_2022
  RNA velocity validation
  ☆23Updated 3 years ago
• theislab / scib-reproducibility
  Additional code and analysis from the single-cell integration benchmarking project
  ☆59Updated 2 years ago
• lilab-bcb / harmony-pytorch
  ☆51Updated last week
• kaizhang / single-cell-benchmark
  ☆10Updated last year
• AllonKleinLab / cospar
  ☆26Updated last year
• kkdey / GSSG
  Gene Set + S2G strategy annotations analyzed for disease architecture
  ☆50Updated 2 years ago
• const-ae / pyLemur
  A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.
  ☆24Updated 2 months ago
• saezlab / greta
  Benchmark of GRNs using the GRETA pipeline
  ☆23Updated this week
• pachterlab / BHGP_2022
  ☆21Updated 2 years ago
• jzhoulab / quasildr
  Quasilinear data representations for single-cell omics data analysis
  ☆42Updated last year
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆39Updated last year