weililab / scMAGeCKLinks
The R Bioconductor package for scMAGeCK.
☆13Updated last year
Alternatives and similar repositories for scMAGeCK
Users that are interested in scMAGeCK are comparing it to the libraries listed below
Sorting:
- ☆12Updated 5 years ago
- scWGCNA☆61Updated 3 years ago
- ☆63Updated 2 years ago
- ☆48Updated last year
- Repository for Cibersortx☆62Updated 4 years ago
- ☆54Updated last year
- R package for robust clustering of single cell RNA sequencing data☆36Updated last year
- ☆34Updated 6 years ago
- Code related to the Celligner manuscript☆46Updated 5 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆28Updated 5 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆30Updated 5 years ago
- Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection☆41Updated 4 years ago
- scRNA-seq cell type identification☆44Updated 6 years ago
- ☆33Updated 4 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆58Updated 4 years ago
- ☆64Updated 5 years ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆87Updated 2 months ago
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 4 years ago
- Single cell RNA-seq analysis bundle☆37Updated 6 years ago
- ☆30Updated 7 years ago
- ☆34Updated 6 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆31Updated 3 years ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated last week
- Scripts needed to generate the figures for the Monocle 2 paper (Qiu et al, 2017)☆29Updated 5 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆53Updated 2 years ago
- ☆25Updated 3 months ago
- ☆56Updated 5 years ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆56Updated 2 years ago
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆46Updated last year