The R Bioconductor package for scMAGeCK.
☆13Apr 20, 2024Updated last year
Alternatives and similar repositories for scMAGeCK
Users that are interested in scMAGeCK are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.☆36Sep 4, 2025Updated 7 months ago
- ☆15May 16, 2019Updated 6 years ago
- ☆13Feb 12, 2026Updated 2 months ago
- Tutorials for Squidpy☆34Dec 18, 2025Updated 3 months ago
- Data analysis scripts for Datlinger et. al, 2017 (doi:10.1038/nmeth.4177)☆32Feb 22, 2018Updated 8 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Core utilities for single-cell RNA-seq☆13Apr 6, 2026Updated last week
- pipelines to process scRNA-seq data☆12Jan 11, 2021Updated 5 years ago
- ☆26Mar 12, 2026Updated last month
- Code for single-cell eQTL analysis of memory T cell data in Nathan, et al. bioRxiv (2021)☆22Jul 6, 2023Updated 2 years ago
- Tutorial for using the perturbseq library to load and manipulate experiments☆24Aug 7, 2019Updated 6 years ago
- Capybara: A computational tool to measure cell identity and fate transitions☆61May 23, 2022Updated 3 years ago
- Inference of gene dependency from RNAi screening datasets.☆19Apr 9, 2020Updated 6 years ago
- Rapid RNA-seq pipeline using AWS lambda functions for alignment☆13Mar 22, 2019Updated 7 years ago
- ☆10Sep 26, 2019Updated 6 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Analysis on stop reasons☆10Jun 17, 2024Updated last year
- Tools for sgRNA calling in direct capture Perturb-seq data☆41Jun 18, 2023Updated 2 years ago
- ☆63Dec 27, 2023Updated 2 years ago
- Computational pipeline to process EasySci-RNA data.☆23Jan 17, 2024Updated 2 years ago
- Biobb_amber is a BioBB category for AMBER MD package.☆14Mar 17, 2026Updated 3 weeks ago
- A Snakemake pipeline to go from fastq mRNA sequencing files to raw and normalised counts (usable for downstream EDA and differential anal…☆16Mar 3, 2023Updated 3 years ago
- R package CoxBoost☆10Dec 11, 2025Updated 4 months ago
- Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent gen…☆37Dec 16, 2020Updated 5 years ago
- ☆11May 4, 2021Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Project bulk/single-cell RNA-seq data to given LSI space☆11Jan 17, 2022Updated 4 years ago
- A Tidy Framework to Hack Gene Expression Signatures☆21Apr 20, 2025Updated 11 months ago
- Lifterover copy number segments in whole☆24Feb 6, 2024Updated 2 years ago
- Processing pipeline scripts for sci-RNA-seq3 (bash, R, python)☆45Apr 14, 2021Updated 5 years ago
- Code and scripts used in analysis of snRNAseq cerebellar cortex atlas☆12Oct 11, 2021Updated 4 years ago
- RNA-Sequencing data differential expression analysis pipeline. Performs: genome coverage (via bedtools and HTSeq), generates Circos code …☆56Nov 27, 2012Updated 13 years ago
- Reanalysis of the repressive capacity of promoter DNA methylation☆11Feb 14, 2019Updated 7 years ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆24Jan 16, 2024Updated 2 years ago
- ☆58Jan 14, 2026Updated 3 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- R package for transfer learning of single-cell RNA-seq denoising☆31Jun 14, 2022Updated 3 years ago
- Tools for assessing clustering robustness☆30Apr 2, 2026Updated last week
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆17Aug 12, 2022Updated 3 years ago
- Assembly and Annotation of the Human Immune Health Atlas☆21Aug 28, 2025Updated 7 months ago
- ☆12Feb 27, 2019Updated 7 years ago
- ☆50Jan 16, 2020Updated 6 years ago
- Tutorials, workflows, and convenience scripts for Single Cell Portal☆51Mar 5, 2024Updated 2 years ago