broadinstitute / chronosLinks
Modeling of time series data for CRISPR KO experiments
☆37Updated last month
Alternatives and similar repositories for chronos
Users that are interested in chronos are comparing it to the libraries listed below
Sorting:
- Explore the cancer relevance of your gene list☆52Updated 2 weeks ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆39Updated 6 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- Cancer Dependency Map package☆30Updated last year
- Processing workflow for COVID-19 single cell data☆17Updated 3 years ago
- xOmicsShiny: an R Shiny application for cross-omics data analysis and pathway mapping, Bioinformatics Advances, Volume 5, Issue 1, 2025, …☆33Updated 2 months ago
- ☆44Updated 11 months ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 5 years ago
- Fast motif matching in R☆46Updated last year
- A single-cell and spatial RNA-seq database for Alzheimer’s Disease☆26Updated last year
- Hierarchical HotNet is an algorithm for finding hierarchies of active subnetworks.☆38Updated 6 years ago
- 🏺 Exploring novel tumor epitope identification☆36Updated 5 years ago
- GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools☆37Updated 6 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆43Updated last month
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆62Updated 3 months ago
- metadata and data from the database☆41Updated 5 years ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆43Updated 5 years ago
- Signac☆25Updated 2 years ago
- Inference of TCR motifs☆32Updated 3 months ago
- Using BCR and expression for sequence embedding☆25Updated last week
- Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens☆23Updated 6 years ago
- Code and analysis for the 1000 tools paper☆11Updated 3 years ago
- Explore and download data from the recount3 project☆36Updated last week
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Updated 3 years ago
- Refining the impact of genetic evidence on clinical success☆26Updated last year
- IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening☆26Updated last year
- Batch Correction and Adaptive Contrast Calling in Complex RNA-seq Experimental Designs Using DESeq2☆16Updated last week
- This repostory contains codes for Shimada et al., "A tool for browsing the Cancer Dependency Map reveals functional connections between g…☆13Updated 4 years ago
- ☆24Updated 4 months ago
- ☆20Updated 3 years ago