Modeling of time series data for CRISPR KO experiments
☆38Jan 5, 2026Updated 2 months ago
Alternatives and similar repositories for chronos
Users that are interested in chronos are comparing it to the libraries listed below
Sorting:
- DRUGZ software☆24Aug 9, 2021Updated 4 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆30Apr 16, 2020Updated 5 years ago
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Jul 19, 2022Updated 3 years ago
- Code used for biomarker discovery using party (building conditional random forests)☆15May 18, 2018Updated 7 years ago
- Unsupervised correction of gene independent cell responses to CRISPR-cas9☆54Apr 28, 2023Updated 2 years ago
- Computational correction of copy-number effect in CRISPR-Cas9 essentiality screens☆32Mar 21, 2019Updated 6 years ago
- Sample Level Analysis of Pathway Alteration Enrichments☆10Jan 21, 2019Updated 7 years ago
- ☆10Jan 21, 2023Updated 3 years ago
- BAGEL software☆28Jan 30, 2024Updated 2 years ago
- A shiny-based web tool for interactive analysis of DepMap data☆24Feb 13, 2021Updated 5 years ago
- Bioconductor components for general cancer genomics☆11Feb 5, 2023Updated 3 years ago
- Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens☆24Mar 29, 2019Updated 6 years ago
- Bencharking pipeline for evaluating Transcriptomic representations for perturbation tasks☆12Nov 5, 2024Updated last year
- ☆17Apr 4, 2025Updated 11 months ago
- feseR: Combining feature selection methods for analyzing omics data☆16Feb 22, 2025Updated last year
- What you need to process the Quarterly DepMap-Omics releases from Terra☆125Feb 5, 2026Updated last month
- CircSplice☆12Feb 27, 2019Updated 7 years ago
- ☆55Jan 14, 2026Updated last month
- GEMINI: A variational Bayesian approach to identify genetic interactions from combinatorial CRISPR screens☆16Nov 29, 2022Updated 3 years ago
- Simple utilities to manage R environments☆16Apr 19, 2024Updated last year
- ☆17Feb 16, 2024Updated 2 years ago
- CALDER (Cancer Analysis of Longitudinal Data through Evolutionary Reconstruction) reconstructs evolutionary trees from longitudinal bulk …☆15Nov 28, 2023Updated 2 years ago
- ☆12Aug 23, 2018Updated 7 years ago
- Cancer Dependency Map package☆33Aug 16, 2024Updated last year
- Modular & interactive analysis components for bioinformatics☆18Dec 9, 2025Updated 2 months ago
- ☆17Sep 16, 2024Updated last year
- Python module to analyse CRISPR-based libraries☆13Apr 1, 2021Updated 4 years ago
- Retrieve GitHub Stars for any Repository☆14May 31, 2020Updated 5 years ago
- ☆21Feb 25, 2026Updated last week
- cancereffectsizeR: An R package for calculation of somatic mutation rates and quantification of selection in cancer☆19Jan 6, 2026Updated 2 months ago
- Maximum mean discrepancy comparisons for single cell profiling experiments☆19Feb 9, 2022Updated 4 years ago
- Scripts from the GBM cellular states paper☆20Feb 24, 2021Updated 5 years ago
- Rust wrapper for STAR aligner☆19Feb 23, 2026Updated last week
- A Snakemake pipeline for cellranger to process 10x single-cell RNAseq data☆16Oct 15, 2019Updated 6 years ago
- Seamlessly integrate R packages into Python.☆21Apr 12, 2023Updated 2 years ago
- Code related to the Celligner manuscript☆46Oct 30, 2020Updated 5 years ago
- SCASA: Single cell transcript quantification tool☆22Nov 24, 2023Updated 2 years ago
- commandline manipulation of genomic variants and NGS reads☆19Sep 6, 2024Updated last year
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆18Jun 29, 2022Updated 3 years ago