Modeling of time series data for CRISPR KO experiments
☆42Nov 4, 2026Updated this week
Alternatives and similar repositories for chronos
Users that are interested in chronos are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆31Apr 16, 2020Updated 6 years ago
- DRUGZ software☆24Aug 9, 2021Updated 5 years ago
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Jul 19, 2022Updated 4 years ago
- Python module to analyse CRISPR-based libraries☆16Apr 1, 2021Updated 5 years ago
- BAGEL software☆28Jan 30, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Unsupervised correction of gene independent cell responses to CRISPR-cas9☆56Apr 28, 2023Updated 3 years ago
- Computational correction of copy-number effect in CRISPR-Cas9 essentiality screens☆31Mar 21, 2019Updated 7 years ago
- On-Target and Off-Target Scoring Algorithms for CRISPR gRNAs☆31Oct 14, 2026Updated 3 weeks ago
- What you need to process the Quarterly DepMap-Omics releases from Terra☆128Jul 17, 2026Updated 3 months ago
- Phenotype detection in pooled genetic perturbation screens☆12Mar 13, 2024Updated 2 years ago
- Accurate estimation of off-target editing activity from comparative NGS data☆13Jan 22, 2024Updated 2 years ago
- ☆17Sep 16, 2024Updated 2 years ago
- ☆10Jan 21, 2023Updated 3 years ago
- Vignettes to process data and generate figures for the EPI-clone paper☆13May 21, 2025Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Scripts for the analysis of TT-seq and DRB/TT-seq data.☆11Mar 11, 2020Updated 6 years ago
- ☆10Jul 13, 2022Updated 4 years ago
- Analysis package for processing counts from genome-wide CRISPR/Cas9 screens☆16Feb 19, 2021Updated 5 years ago
- Scripts to perform analysis in Agreement between two large pan-cancer CRISPR-Cas9 gene dependency datasets☆13Dec 5, 2019Updated 6 years ago
- CCCvelo: Decoding dynamic cell-cell communication-driven cell state transitions in spatial transcriptomics☆14Sep 14, 2026Updated last month
- Integrative analysis pipeline for pooled CRISPR functional genetic screens☆37Jun 8, 2026Updated 4 months ago
- Tutorials for the crisprVerse☆16Feb 10, 2025Updated last year
- Comprehensive design of CRISPR gRNAs for nucleases and base editors☆35Oct 30, 2026Updated last week
- Code associated with MIX-seq manuscript☆16Aug 26, 2020Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A method for calculating single cell entropy and reconstructing cell differentiation lineage using single-cell RNA-seq data☆10May 26, 2023Updated 3 years ago
- Code used for biomarker discovery using party (building conditional random forests)☆15May 18, 2018Updated 8 years ago
- Pipeline for SpatialTranscriptomics and 10X Visium data☆22Jul 22, 2025Updated last year
- The web application for the crowdsourced gene expression signatures: http://amp.pharm.mssm.edu/creeds/☆11Jul 6, 2023Updated 3 years ago
- Rust wrapper for STAR aligner☆23Apr 13, 2026Updated 6 months ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆27Oct 17, 2024Updated 2 years ago
- Sample Level Analysis of Pathway Alteration Enrichments☆10Jan 21, 2019Updated 7 years ago
- Retrieve GitHub Stars for any Repository☆14May 31, 2020Updated 6 years ago
- ☆62Dec 27, 2023Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆21May 29, 2026Updated 5 months ago
- ☆20Jul 14, 2021Updated 5 years ago
- cEll tyPe enrIChment☆17Dec 11, 2022Updated 3 years ago
- A shiny-based web tool for interactive analysis of DepMap data☆25Feb 13, 2021Updated 5 years ago
- Simple utilities to manage R environments☆16Apr 19, 2024Updated 2 years ago
- CircSplice☆11Feb 27, 2019Updated 7 years ago
- An automated pipeline for processing DamID sequencing datasets☆16Aug 28, 2025Updated last year