Single-cell perturbation analysis
☆354Oct 28, 2026Updated this week
Alternatives and similar repositories for pertpy
Users that are interested in pertpy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆192Feb 25, 2025Updated last year
- Multimodal Data (.h5mu) implementation for Python☆134Updated this week
- Python package to perform enrichment analysis from omics data.☆300Updated this week
- Models and datasets for perturbational single-cell omics☆186Aug 19, 2022Updated 4 years ago
- rapids-singlecell: GPU-accelerated framework for scRNA analysis☆408Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Deep probabilistic analysis of single-cell and spatial omics data☆1,720Updated this week
- This is the alpha version of the CellOracle package☆508Apr 30, 2026Updated 5 months ago
- CellRank: dynamics from multi-view single-cell data☆459Oct 14, 2026Updated 2 weeks ago
- Reference mapping for single-cell genomics☆414Jun 26, 2026Updated 4 months ago
- Multi-omic single-cell optimal transport tools☆217Oct 19, 2026Updated last week
- Modeling complex perturbations with CellFlow☆165Updated this week
- GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations☆420Feb 1, 2025Updated last year
- muon is a multimodal omics Python framework☆279Oct 19, 2026Updated last week
- A tool for semi-automatic cell type classification☆516May 22, 2026Updated 5 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- inferring regulatory cellular dynamics☆199Oct 21, 2026Updated last week
- Unsupervised Deep Disentangled Representation of Single-Cell Omics☆83Updated this week
- Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction …☆511Oct 15, 2026Updated 2 weeks ago
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆203Aug 24, 2026Updated 2 months ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆135Aug 3, 2026Updated 2 months ago
- The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…☆157Aug 14, 2024Updated 2 years ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆75Jul 9, 2026Updated 3 months ago
- A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…☆267Mar 14, 2026Updated 7 months ago
- A Bayesian model for compositional single-cell data analysis☆204Jan 13, 2026Updated 9 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- LIANA+: an all-in-one framework for cell-cell communication☆324Oct 9, 2026Updated 3 weeks ago
- AnnData interoperability in R☆201Updated this week
- Spatial Single Cell Analysis in Python☆612Updated this week
- ☆70Sep 13, 2024Updated 2 years ago
- 🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.☆289Updated this week
- Benchmarking analysis of data integration tools☆435Apr 27, 2026Updated 6 months ago
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆39Jul 11, 2025Updated last year
- ☆75Jan 14, 2026Updated 9 months ago
- An open and interoperable data framework for spatial omics data☆404Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Arc Virtual Cell Atlas☆644Sep 29, 2026Updated last month
- ☆102Aug 12, 2024Updated 2 years ago
- ☆101Aug 10, 2026Updated 2 months ago
- ☆1,662Apr 29, 2026Updated 6 months ago
- Automatically annotate cell types, consistently across samples.☆30Updated this week
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆19Apr 20, 2024Updated 2 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆94Oct 11, 2026Updated 2 weeks ago