scverse / pertpyLinks
Single-cell perturbation analysis
☆212Updated last week
Alternatives and similar repositories for pertpy
Users that are interested in pertpy are comparing it to the libraries listed below
Sorting:
- Python package to perform enrichment analysis from omics data.☆238Updated this week
- A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…☆223Updated 4 months ago
- Accelerated, Python-only, single-cell integration benchmarking metrics☆77Updated this week
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆151Updated 8 months ago
- LIANA+: an all-in-one framework for cell-cell communication☆243Updated 3 weeks ago
- Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms☆178Updated last year
- 🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.☆241Updated last year
- Multi-omic single-cell optimal transport tools☆177Updated this week
- Episcanpy: Epigenomics Single Cell Analysis in Python☆148Updated 11 months ago
- muon is a multimodal omics Python framework☆254Updated this week
- Batch balanced KNN☆174Updated 2 years ago
- Models and datasets for perturbational single-cell omics☆167Updated 3 years ago
- Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.☆177Updated last week
- Scanpy Tutorials.☆228Updated this week
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆143Updated 2 years ago
- Benchmarking analysis of data integration tools☆392Updated last month
- A novel machine learning pipeline to analyse spatial transcriptomics data☆234Updated 2 weeks ago
- Differential expression analysis for single-cell RNA-seq data.☆204Updated 3 weeks ago
- ☆143Updated last year
- Reference mapping for single-cell genomics☆387Updated last month
- ☆86Updated last year
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆169Updated 7 months ago
- Multimodal Data (.h5mu) implementation for Python☆98Updated 2 weeks ago
- A simulator for single cell multi-omics and spatial omics data that provides ground truth to benchmark a wide range of methods.☆63Updated last week
- CZ CELLxGENE Discover Census☆113Updated last week
- rapids_singlecell: GPU-accelerated framework for scRNA analysis☆261Updated this week
- Formalizing and benchmarking open problems in single-cell genomics☆57Updated 5 months ago
- 🏃 The go-to single-cell Foundation Model☆117Updated last week
- Sequence-based Modeling of single-cell ATAC-seq using Convolutional Neural Networks.☆98Updated 2 months ago
- A scanpy extension to analyse single-cell TCR and BCR data.☆242Updated last week