Single-cell perturbation analysis
☆337Aug 26, 2026Updated this week
Alternatives and similar repositories for pertpy
Users that are interested in pertpy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆186Feb 25, 2025Updated last year
- Multimodal Data (.h5mu) implementation for Python☆132Updated this week
- Python package to perform enrichment analysis from omics data.☆292Updated this week
- rapids-singlecell: GPU-accelerated framework for scRNA analysis☆394Updated this week
- Multi-omic single-cell optimal transport tools☆216Updated this week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- CellRank: dynamics from multi-view single-cell data☆456Updated this week
- GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations☆401Feb 1, 2025Updated last year
- Models and datasets for perturbational single-cell omics☆182Aug 19, 2022Updated 4 years ago
- A tool for semi-automatic cell type classification☆502May 22, 2026Updated 3 months ago
- The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…☆150Aug 14, 2024Updated 2 years ago
- Deep probabilistic analysis of single-cell and spatial omics data☆1,683Updated this week
- inferring regulatory cellular dynamics☆186Updated this week
- Reference mapping for single-cell genomics☆407Jun 26, 2026Updated 2 months ago
- LIANA+: an all-in-one framework for cell-cell communication☆314Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆71Jan 14, 2026Updated 7 months ago
- Modeling complex perturbations with CellFlow☆157Updated this week
- This is the alpha version of the CellOracle package☆487Apr 30, 2026Updated 4 months ago
- Automatically annotate cell types, consistently across samples.☆27Updated this week
- A Bayesian model for compositional single-cell data analysis☆200Jan 13, 2026Updated 7 months ago
- muon is a multimodal omics Python framework☆278Updated this week
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆196Updated this week
- ☆96Aug 10, 2026Updated 2 weeks ago
- An open and interoperable data framework for spatial omics data☆387Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…☆259Mar 14, 2026Updated 5 months ago
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆39Jul 11, 2025Updated last year
- Unsupervised Deep Disentangled Representation of Single-Cell Omics☆79Updated this week
- Aligning gene expression trajectories of single-cell reference and query systems☆90Jul 28, 2026Updated last month
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆71Jul 9, 2026Updated last month
- State is a machine learning model that predicts cellular perturbation response across diverse contexts☆651Jul 24, 2026Updated last month
- ☆53Jun 16, 2025Updated last year
- ☆101Aug 12, 2024Updated 2 years ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆130Aug 3, 2026Updated 3 weeks ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- AnnData interoperability in R☆195Updated this week
- Arc Virtual Cell Atlas☆584Updated this week
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆28Jan 3, 2025Updated last year
- ☆68Sep 13, 2024Updated last year
- Robust and scalable single-cell signature scoring☆28Jul 28, 2026Updated last month
- Benchmarking analysis of data integration tools☆429Apr 27, 2026Updated 4 months ago
- Minibatch loading for on-disk anndata files, co-developed by Lamin Labs and scverse☆68Updated this week