KangBoming / BulkFormerLinks
BulkFormer: A large-scale foundation model for human bulk transcriptomes
☆20Updated 2 months ago
Alternatives and similar repositories for BulkFormer
Users that are interested in BulkFormer are comparing it to the libraries listed below
Sorting:
- PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation☆46Updated 2 months ago
- PRnet is a flexible and scalable perturbation-conditioned generative model predicting transcriptional responses to unseen complex perturb…☆60Updated 9 months ago
- Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.☆123Updated 7 months ago
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆50Updated last month
- Contextual AI models for single-cell protein biology☆88Updated 7 months ago
- Python package to load and query ARCHS4 data☆23Updated last month
- ☆11Updated 3 months ago
- ☆72Updated last year
- A deep generative neural network based approach to impute drug response☆21Updated 4 years ago
- Scripts and datasets to reproduce the experiment of the paper "Exploring non-coding RNA functions with deep learning tools"☆15Updated 4 years ago
- Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.☆27Updated last month
- Knowledge-primed neural networks☆38Updated 2 years ago
- KGWAS: novel genetics discovery enabled by massive functional genomics knowledge graph☆73Updated 6 months ago
- ☆38Updated 2 years ago
- Functional Embedding of Gene Signatures☆46Updated last year
- ☆53Updated 9 months ago
- Deep Learning the T Cell Receptor Binding Specificity of Neoantigen☆84Updated 3 years ago
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 3 years ago
- A Deep Learning based Efficacy Prediction System for drug discovery☆71Updated 2 years ago
- scDiff: A General Single-Cell Analysis Framework via Conditional Diffusion Generative Models☆30Updated last year
- ☆84Updated 2 years ago
- Computational Optimization of DNA Activity (CODA)☆61Updated 5 months ago
- ☆77Updated last month
- A visible neural network model for drug response prediction☆149Updated 2 years ago
- ☆19Updated 3 years ago
- Paper collection for single cell foundation models☆34Updated last year
- The official code implementation for Chromoformer in PyTorch. (Lee et al., Nature Communications. 2022)☆36Updated 2 years ago
- ☆21Updated 2 years ago
- A deep-learning framework for multi-omics integration☆27Updated 2 years ago
- ☆20Updated 11 months ago