BulkFormer: A large-scale foundation model for human bulk transcriptomes
☆83Jul 3, 2026Updated 2 months ago
Alternatives and similar repositories for BulkFormer
Users that are interested in BulkFormer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- PRnet is a flexible and scalable perturbation-conditioned generative model predicting transcriptional responses to unseen complex perturb…☆91Dec 13, 2024Updated last year
- AetherCell is a hierarchical generative framework designed to predict context-specific transcriptomic responses to drugs and genetic pert…☆22Sep 11, 2026Updated last week
- ☆45Apr 1, 2026Updated 5 months ago
- ☆53Jun 16, 2025Updated last year
- Contrastive pre-training for technology-agnostic single-cell representations beyond reconstruction☆38Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆13Jan 8, 2026Updated 8 months ago
- ☆63Aug 23, 2026Updated last month
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆18Apr 20, 2024Updated 2 years ago
- Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.☆160Feb 6, 2025Updated last year
- X-Cell: a diffusion language model for genome-scale perturbation prediction☆122Mar 16, 2026Updated 6 months ago
- tumor - cancer cell line alignment. Use it on the depmap portal or install it with pip.☆13Dec 5, 2023Updated 2 years ago
- UNAGI: deep generative AI for virtual disease and unsuperivsed in-silico perturbations.☆62Aug 24, 2026Updated 3 weeks ago
- ☆28Jan 10, 2025Updated last year
- [Nature Biomedical Engineering]This is the official code repo for the paper: spEMO: Exploring the Capacity of Foundation Models for Analy…☆22May 9, 2026Updated 4 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Code and example of the D-SPIN framework☆43Aug 5, 2026Updated last month
- Open-source foundation models for multi-omics representation learning☆43Jun 3, 2026Updated 3 months ago
- A Predictive World Model of the Transcriptome☆35Oct 18, 2025Updated 11 months ago
- Generalizable AI predicts immunotherapy outcomes across cancers and treatments☆114May 19, 2026Updated 4 months ago
- ☆74Jan 14, 2026Updated 8 months ago
- GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations☆409Feb 1, 2025Updated last year
- ☆17Jul 8, 2024Updated 2 years ago
- Single-cell perturbation effects prediction benchmark☆104Sep 14, 2026Updated last week
- An eXplainable Cell-specific machine learning method to predict clinical Phenotypes using single-cell multi-omics☆17Sep 23, 2025Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Explore the cancer relevance of your gene list☆55Aug 11, 2026Updated last month
- ☆165Nov 6, 2025Updated 10 months ago
- Single-Cell Inference of Class Switch Recombination☆25Jun 19, 2026Updated 3 months ago
- ComBat-ref is a Simple and Highly Effective Batch Effect Correction Method for RNA-seq Count Data☆17Aug 4, 2026Updated last month
- A Deep Learning-Based Model for the integration, cross-dataset cross-modality generation, self augmentation and matched multi-omics simul…☆19Aug 9, 2025Updated last year
- ☆19Apr 16, 2026Updated 5 months ago
- CellVerse: Do Large Language Models Really Understand Cell Biology?☆17May 14, 2025Updated last year
- State is a machine learning model that predicts cellular perturbation response across diverse contexts☆700Jul 24, 2026Updated last month
- ☆99Aug 24, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A human universal senescence index to evaluate celluar senescence☆44Sep 11, 2025Updated last year
- A repository for reproducing experiments from the TxPert paper☆51Mar 25, 2026Updated 5 months ago
- Python package to load and query ARCHS4 data☆31Jul 6, 2026Updated 2 months ago
- R package: ConDecon is a clustering-independent deconvolution method for estimating cell abundances in bulk tissues using single-cell RNA…☆14Oct 17, 2024Updated last year
- Implementation of MaSigPro for scRNA-Seq Data☆20Jul 31, 2024Updated 2 years ago
- Contextual AI models for single-cell protein biology☆110May 7, 2026Updated 4 months ago
- Code for "Foundation Models Improve Perturbation Response Prediction"☆29Apr 16, 2026Updated 5 months ago