Katsevich-Lab / sceptreLinks
An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.
☆34Updated last month
Alternatives and similar repositories for sceptre
Users that are interested in sceptre are comparing it to the libraries listed below
Sorting:
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 5 years ago
- Individual level Differential Expression Analysis for Single cells☆26Updated 2 years ago
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago
- Dynamical systems methods for RNA velocity analysis☆24Updated 4 years ago
- ACTIONet single-cell analysis framework☆42Updated last year
- Code associated with MIX-seq manuscript☆15Updated 5 years ago
- Quasilinear data representations for single-cell omics data analysis☆43Updated 2 years ago
- An energy landscape-based approach for measuring developmental states and inferring cellular trajectories from single cell RNA-seq data☆18Updated 4 years ago
- Multi-study integration of cellular trajectories☆19Updated 5 years ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 3 years ago
- Causal inference, differential expression, and co-expression for scRNA-seq☆18Updated 3 years ago
- ☆29Updated 4 months ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 7 months ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆22Updated last year
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Updated last year
- benchmark for single-cell RNA-seq imputation methods☆28Updated last year
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆55Updated 4 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆44Updated last month
- Dynamic models for single-cell RNA-seq time series.☆40Updated 7 years ago
- RNA velocity validation☆22Updated 3 years ago
- ☆48Updated last year
- Fast motif matching in R☆46Updated last year
- epigenome analysis to rank transcription factors☆13Updated 5 years ago
- ☆15Updated 2 years ago
- Information-based dimensionality reduction☆29Updated 10 months ago
- GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools☆37Updated 6 months ago
- Gene Set + S2G strategy annotations analyzed for disease architecture☆55Updated 2 years ago
- Netbooks is a JupyterHub catalog of use cases in gene regulatory network inference using netZoo methods..☆44Updated last week
- Unsupervised cell functional annotation for single-cell RNA-Seq☆22Updated 2 years ago
- Regulatory networks with Direct Information☆17Updated 6 years ago