Katsevich-Lab / sceptreLinks
An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.
☆33Updated this week
Alternatives and similar repositories for sceptre
Users that are interested in sceptre are comparing it to the libraries listed below
Sorting:
- Individual level Differential Expression Analysis for Single cells☆24Updated 2 years ago
- Quasilinear data representations for single-cell omics data analysis☆42Updated 2 years ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago
- Causal inference, differential expression, and co-expression for scRNA-seq☆18Updated 3 years ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆22Updated last year
- Gene Set + S2G strategy annotations analyzed for disease architecture☆53Updated 2 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 5 years ago
- Hierarchical classification of cells☆25Updated last year
- ☆29Updated 3 years ago
- Code associated with MIX-seq manuscript☆15Updated 4 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆55Updated 2 months ago
- ☆21Updated last year
- RNA velocity validation☆22Updated 3 years ago
- post-clustering differential expression test☆35Updated 6 years ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 5 months ago
- ☆47Updated last year
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- Single cell STEM (scSTEM) is a shiny app based R package for visualizing and clustering genes in pseudotime ordered single cell RNA-seq d…☆18Updated 3 years ago
- Multi-study integration of cellular trajectories☆19Updated 5 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 6 years ago
- benchmark for single-cell RNA-seq imputation methods☆26Updated last year
- ☆19Updated 4 months ago
- CellRegMap: A statistical framework for mapping context-specific regulatory variants using scRNA-seq☆22Updated last year
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆43Updated last week
- A single-cell analysis toolkit to jointly analyze samples from distinct conditions☆32Updated 4 months ago
- An energy landscape-based approach for measuring developmental states and inferring cellular trajectories from single cell RNA-seq data☆18Updated 4 years ago
- Information-based dimensionality reduction☆29Updated 8 months ago
- ☆29Updated 2 years ago
- ☆29Updated 5 months ago