An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.
☆38May 21, 2026Updated this week
Alternatives and similar repositories for sceptre
Users that are interested in sceptre are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Space- and time-optimal algorithms for large single-cell expression matrices, with a focus on single-cell CRISPR screens.☆13Apr 13, 2024Updated 2 years ago
- An end-to-end computational pipeline for large Perturb-seq screens☆15Apr 25, 2025Updated last year
- ☆19Apr 4, 2025Updated last year
- ☆17Jun 2, 2022Updated 3 years ago
- ☆13Updated this week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- The R Bioconductor package for scMAGeCK.☆13Apr 20, 2024Updated 2 years ago
- Analysis code for the TAP-seq manuscript.☆11Jun 25, 2021Updated 4 years ago
- Causal inference, differential expression, and co-expression for scRNA-seq☆21Dec 19, 2025Updated 5 months ago
- A collection of perl scripts for NGS analysis☆17Oct 2, 2024Updated last year
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Jan 25, 2022Updated 4 years ago
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆174Feb 25, 2025Updated last year
- Variant impact phenotyping using Perturb-seq☆10Apr 22, 2024Updated 2 years ago
- ☆21Mar 2, 2026Updated 2 months ago
- ☆47Sep 23, 2025Updated 8 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Single-cell Case Control Analysis☆57Feb 26, 2026Updated 2 months ago
- MultiSKAT is an R-package focused at rare-variant analysis of continuous multiple phenotype data. This project contains the R-codes/funct…☆12Jun 11, 2019Updated 6 years ago
- model-based understanding of single-cell CRISPR screening☆28Dec 13, 2024Updated last year
- ☆13Apr 16, 2021Updated 5 years ago
- Modeling of time series data for CRISPR KO experiments☆38Apr 29, 2026Updated 3 weeks ago
- Advanced steps of the OSCA book☆14Apr 27, 2026Updated 3 weeks ago
- Suite of heritability and genetic correlation estimation tools for exome-sequencing data☆36Dec 5, 2025Updated 5 months ago
- R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…☆34Nov 28, 2025Updated 5 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆31Dec 3, 2024Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆84Jul 18, 2025Updated 10 months ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆30Apr 16, 2020Updated 6 years ago
- A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.☆97Jul 31, 2019Updated 6 years ago
- Mutation rate analysis of autosomal loci☆15Jun 25, 2020Updated 5 years ago
- ☆38Apr 16, 2025Updated last year
- An R library for conducting analyses on COMPASS data.☆16Jun 10, 2021Updated 4 years ago
- Tools for sgRNA calling in direct capture Perturb-seq data☆41Jun 18, 2023Updated 2 years ago
- FiberNavigator - Maxime Chamberland -☆10Feb 9, 2022Updated 4 years ago
- False discovery rate regression☆10Nov 12, 2020Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Factorize-Recover for Perturb-seq analysis (FR-Perturb)☆25Nov 4, 2025Updated 6 months ago
- Single cell omics biology annotations☆57Updated this week
- scRNAseq integration with triplet neural networks☆41Feb 2, 2026Updated 3 months ago
- Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms☆195Jan 30, 2026Updated 3 months ago
- IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening☆30Aug 20, 2024Updated last year
- ☆14Feb 12, 2026Updated 3 months ago
- CIARA (Cluster Independent Algorithm for the identification of markers of RAre cell types) is an R package that identifies potential mar…☆16Jan 1, 2026Updated 4 months ago