Katsevich-Lab / sceptreLinks
An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.
☆30Updated last month
Alternatives and similar repositories for sceptre
Users that are interested in sceptre are comparing it to the libraries listed below
Sorting:
- ☆18Updated last month
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆51Updated this week
- Code associated with MIX-seq manuscript☆15Updated 4 years ago
- CellRegMap: A statistical framework for mapping context-specific regulatory variants using scRNA-seq☆22Updated 9 months ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 5 years ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆21Updated last year
- Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data☆26Updated 5 years ago
- Quasilinear data representations for single-cell omics data analysis☆42Updated 2 years ago
- R package that performs sparse factor analysis and differential gene expression discovery simultaneously on single-cell CRISPR screening …☆19Updated last year
- post-clustering differential expression test☆35Updated 6 years ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆18Updated 2 years ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- Single-cell Scalable Visualization and Analytics☆25Updated 6 years ago
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 3 years ago
- ☆12Updated 5 years ago
- Landscape Single Cell Entropy☆21Updated 4 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆43Updated this week
- Exon-Intron Split Analysis (EISA) in R☆16Updated last month
- benchmark for single-cell RNA-seq imputation methods☆26Updated last year
- scRNAseq integration with triplet neural networks☆40Updated 2 years ago
- Hierarchical classification of cells☆23Updated 10 months ago
- Regulatory networks with Direct Information☆16Updated 5 years ago
- ☆41Updated 4 years ago
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆21Updated 11 months ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 7 months ago
- CellWalkR: An R Package for integrating single-cell and bulk data to resolve regulatory elements☆15Updated this week
- Marker gene selection from scRNA-seq data☆15Updated 4 years ago
- ☆28Updated 6 years ago
- RNA velocity validation☆22Updated 3 years ago