identifying disease critical cell types and programs from single cell RNAseq
☆61May 30, 2022Updated 4 years ago
Alternatives and similar repositories for scgenetics
Users that are interested in scgenetics are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Gene Set + S2G strategy annotations analyzed for disease architecture☆62Nov 18, 2022Updated 3 years ago
- Single-cell disease relevance score (scDRS)☆194Jun 27, 2026Updated last month
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆14Oct 21, 2024Updated last year
- Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.☆60Mar 20, 2026Updated 4 months ago
- An end-to-end computational pipeline for large Perturb-seq screens☆16Jul 27, 2026Updated 2 weeks ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆19Jun 29, 2022Updated 4 years ago
- Open4Gene, A Hurdle Model-based Method for Peak-to-Gene Linkage Analysis☆17Mar 17, 2026Updated 4 months ago
- ☆16Sep 1, 2023Updated 2 years ago
- python API to the CoGAPS NMF package☆22Jul 24, 2026Updated 3 weeks ago
- ☆23Jun 30, 2026Updated last month
- ☆69Apr 22, 2026Updated 3 months ago
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆87Apr 21, 2025Updated last year
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆46Sep 20, 2024Updated last year
- Colocalization analysis of genetic association signals☆60Jun 13, 2025Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆124Jan 22, 2024Updated 2 years ago
- Create Regional Association Plots☆13May 27, 2026Updated 2 months ago
- R package for performing Mendelian Randomization using mixture models☆25Jan 27, 2020Updated 6 years ago
- Trans-association between HLA and TCR-CDR3☆19Mar 29, 2023Updated 3 years ago
- Data processing and analysis related code associated with the study "A single-cell and spatially resolved atlas of human breast cancers".☆134Sep 24, 2024Updated last year
- Pipeline for analyzing rare mutations in metagenome-assembled genomes☆10Apr 4, 2025Updated last year
- scVI extension for unspliced RNA☆15May 18, 2025Updated last year
- A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest …☆29Sep 20, 2022Updated 3 years ago
- ☆13Updated this week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data☆30Aug 2, 2022Updated 4 years ago
- Regional association plots☆25Apr 1, 2024Updated 2 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆90Jul 28, 2026Updated 2 weeks ago
- Code to run the scHLApers pipeline for personalized single-cell HLA quantification☆18Jan 10, 2024Updated 2 years ago
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆262Jan 16, 2026Updated 6 months ago
- Hypothesis Prioritisation in multi-trait Colocalization☆58Apr 8, 2024Updated 2 years ago
- Collaborative genetic studies of idiopathic pulmonary fibrosis☆22Jul 17, 2026Updated 3 weeks ago
- Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.☆47Mar 16, 2026Updated 4 months ago
- LocusCompareR is a R package with visualization tools for comparing two genetic association datasets.☆136Jul 8, 2026Updated last month
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- GWAS genetics Fine-mapping method☆27Jun 11, 2026Updated 2 months ago
- Methods for converting eQTL summary statistics into TWAS SNP-weights☆15Jul 2, 2025Updated last year
- Custom codes accompanying single cell spatial transcriptomic study on the healthy human lung☆15Dec 27, 2023Updated 2 years ago
- CELLECT (CELL-type Expression-specific integration for Complex Traits)☆102Aug 16, 2024Updated last year
- Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.☆43May 2, 2018Updated 8 years ago
- cell type specific, trait-associated gene regulation☆30Aug 5, 2026Updated last week
- single cell analysis of treatment naive and treated human PDAC☆25May 27, 2022Updated 4 years ago