identifying disease critical cell types and programs from single cell RNAseq
☆58May 30, 2022Updated 3 years ago
Alternatives and similar repositories for scgenetics
Users that are interested in scgenetics are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Gene Set + S2G strategy annotations analyzed for disease architecture☆59Nov 18, 2022Updated 3 years ago
- Open4Gene, A Hurdle Model-based Method for Peak-to-Gene Linkage Analysis☆16Mar 17, 2026Updated last week
- Single-cell disease relevance score (scDRS)☆177Sep 2, 2025Updated 6 months ago
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆14Oct 21, 2024Updated last year
- Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.☆61Updated this week
- NordVPN Threat Protection Pro™ • AdTake your cybersecurity to the next level. Block phishing, malware, trackers, and ads. Lightweight app that works with all browsers.
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆18Jun 29, 2022Updated 3 years ago
- An end-to-end computational pipeline for large Perturb-seq screens☆15Apr 25, 2025Updated 11 months ago
- python API to the CoGAPS NMF package☆19May 19, 2025Updated 10 months ago
- ☆62Dec 8, 2025Updated 3 months ago
- ☆16Sep 1, 2023Updated 2 years ago
- ☆20Jul 28, 2025Updated 7 months ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆45Sep 20, 2024Updated last year
- Colocalization analysis of genetic association signals☆56Jun 13, 2025Updated 9 months ago
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆118Jan 22, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆83Apr 21, 2025Updated 11 months ago
- Create Regional Association Plots☆13Sep 7, 2025Updated 6 months ago
- Trans-association between HLA and TCR-CDR3☆19Mar 29, 2023Updated 2 years ago
- Data processing and analysis related code associated with the study "A single-cell and spatially resolved atlas of human breast cancers".☆128Sep 24, 2024Updated last year
- R package for performing Mendelian Randomization using mixture models☆25Jan 27, 2020Updated 6 years ago
- scVI extension for unspliced RNA☆16May 18, 2025Updated 10 months ago
- Integration of gut cell atlases☆35Oct 29, 2025Updated 4 months ago
- Pipeline for analyzing rare mutations in metagenome-assembled genomes☆10Apr 4, 2025Updated 11 months ago
- A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest …☆26Sep 20, 2022Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Aligning gene expression trajectories of single-cell reference and query systems☆83Aug 10, 2025Updated 7 months ago
- LocusCompareR is a R package with visualization tools for comparing two genetic association datasets.☆120Nov 24, 2022Updated 3 years ago
- Code to run the scHLApers pipeline for personalized single-cell HLA quantification☆17Jan 10, 2024Updated 2 years ago
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆248Jan 16, 2026Updated 2 months ago
- Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.☆45Mar 16, 2026Updated last week
- Collaborative genetic studies of idiopathic pulmonary fibrosis☆21Jan 7, 2026Updated 2 months ago
- Hypothesis Prioritisation in multi-trait Colocalization☆55Apr 8, 2024Updated last year
- A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data☆29Aug 2, 2022Updated 3 years ago
- Methods for converting eQTL summary statistics into TWAS SNP-weights☆14Jul 2, 2025Updated 8 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Custom codes accompanying single cell spatial transcriptomic study on the healthy human lung☆13Dec 27, 2023Updated 2 years ago
- Regional association plots☆24Apr 1, 2024Updated last year
- CELLECT (CELL-type Expression-specific integration for Complex Traits)☆93Aug 16, 2024Updated last year
- single cell analysis of treatment naive and treated human PDAC