karthikj89 / scgenetics
identifying disease critical cell types and programs from single cell RNAseq
☆52Updated 2 years ago
Alternatives and similar repositories for scgenetics:
Users that are interested in scgenetics are comparing it to the libraries listed below
- Gene Set + S2G strategy annotations analyzed for disease architecture☆50Updated 2 years ago
- ☆47Updated 2 months ago
- Code for single-cell eQTL analysis of memory T cell data in Nathan, et al. bioRxiv (2021)☆17Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆60Updated 4 months ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆43Updated last year
- scWGCNA☆56Updated 2 years ago
- CELLEX (CELL-type EXpression-specificity)☆39Updated last year
- Obtain trait-relevant cell subpopulations by incorporating pathway activity transformed scRNA-seq data with GWAS data☆18Updated 3 months ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 3 years ago
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- ☆39Updated 3 years ago
- Functional Inference of Gene Regulation☆40Updated 8 months ago
- Single cell RNA-seq analysis bundle☆34Updated 5 years ago
- Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)☆15Updated last year
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆33Updated 4 years ago
- ☆24Updated last year
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆72Updated 6 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆26Updated 3 months ago
- ☆30Updated last year
- Gene regulatory network containing signed transcription factor-target gene interactions☆71Updated 10 months ago
- Functions for single cell data analysis☆31Updated 3 years ago
- ☆32Updated 10 months ago
- ☆35Updated last year
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated last year
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆33Updated last year
- ☆20Updated 4 years ago
- codes used in the human kidney eQTL(cf) and eQTL(ci) and snATAC-seq data☆19Updated 4 years ago
- code for data processing and visualisation associated with the stromal subclasses manuscript☆11Updated 4 years ago
- A unified interface to spatial transcriptomics deconvolution tools☆40Updated last week
- ☆18Updated last year