karthikj89 / scgenetics
identifying disease critical cell types and programs from single cell RNAseq
☆52Updated 2 years ago
Alternatives and similar repositories for scgenetics:
Users that are interested in scgenetics are comparing it to the libraries listed below
- Gene Set + S2G strategy annotations analyzed for disease architecture☆50Updated 2 years ago
- scWGCNA☆56Updated 2 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆42Updated last year
- ☆35Updated 11 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆59Updated 4 months ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆32Updated 4 years ago
- ☆47Updated last month
- A unified interface to spatial transcriptomics deconvolution tools☆40Updated this week
- Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)☆14Updated last year
- ☆29Updated last year
- Single cell RNA-seq analysis bundle☆34Updated 5 years ago
- R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.☆43Updated last month
- Code for single-cell eQTL analysis of memory T cell data in Nathan, et al. bioRxiv (2021)☆16Updated last year
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆71Updated 5 months ago
- ☆44Updated 5 years ago
- ☆24Updated last year
- Obtain trait-relevant cell subpopulations by incorporating pathway activity transformed scRNA-seq data with GWAS data☆17Updated 2 months ago
- Functional Inference of Gene Regulation☆40Updated 7 months ago
- Functions for single cell data analysis☆29Updated 3 years ago
- mutation(barcode) caller for 10x single cell data☆44Updated 4 years ago
- CELLEX (CELL-type EXpression-specificity)☆39Updated last year
- ☆39Updated 3 years ago
- Pipeline for characterizing metebolic heterogeneity from single-cell RNA-seq data☆23Updated 3 years ago
- R package for pathway analysis in scRNA-seq data☆69Updated 6 months ago
- ☆60Updated 4 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆25Updated 4 months ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆26Updated 7 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆70Updated 9 months ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 3 years ago
- ☆18Updated 11 months ago