scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism
☆18Oct 17, 2024Updated last year
Alternatives and similar repositories for scPRAM
Users that are interested in scPRAM are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A deep convolutional neural network for the accurate prediction of silencers☆16May 23, 2023Updated 2 years ago
- stPlus: reference-based enhancement of spatial transcriptomics☆20Jan 6, 2024Updated 2 years ago
- ☆13Jan 24, 2024Updated 2 years ago
- Single-cell epigenomic data annotation via supervised non-linear embedding☆24Apr 14, 2022Updated 3 years ago
- code for paper: Identifiability Guarantees for Causal Disentanglement from Soft Interventions☆15Nov 27, 2023Updated 2 years ago
- Code referenced in the manuscript 'The 16S rRNA gene for species and strain-level microbiome analysis'☆10Sep 26, 2019Updated 6 years ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Jan 11, 2025Updated last year
- Five pillars of computational reproducibility☆11Feb 6, 2024Updated 2 years ago
- Python bindings for SingleR☆15Jan 6, 2026Updated 2 months ago
- Cross-modal generation of molecules from gene expression inputs. (Briefings in Bioinformatics 2024)☆11May 3, 2025Updated 10 months ago
- scNOVA : Single-Cell Nucleosome Occupancy and genetic Variation Analysis☆11Jul 29, 2023Updated 2 years ago
- A foundation model for single-cell epigenomic data☆60Jan 6, 2026Updated 2 months ago
- scOpen: single-cell open chromatin analysis via NMF modelling☆27Feb 4, 2023Updated 3 years ago
- Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data☆30Oct 24, 2024Updated last year
- ☆16Sep 1, 2023Updated 2 years ago
- The official implementation for "SANGO".☆11Mar 17, 2024Updated 2 years ago
- Build contrasts for models defined with formulaic☆12Updated this week
- A modular tool for proportion analysis in single-cell sequencing data☆25Feb 26, 2026Updated 3 weeks ago
- A single-cell analysis toolkit to jointly analyze samples from distinct conditions☆34Apr 2, 2025Updated 11 months ago
- Modeling complex perturbations with CellFlow☆124Mar 16, 2026Updated last week
- ☆43Jan 26, 2026Updated last month
- scVI extension for unspliced RNA☆16May 18, 2025Updated 10 months ago
- ☆62Dec 8, 2025Updated 3 months ago
- R tools for analysis and visualization of single-cell subclustering data☆18Sep 9, 2025Updated 6 months ago
- python API to the CoGAPS NMF package☆19May 19, 2025Updated 10 months ago
- Single-Cell (Perturbation) Model Library☆94Mar 10, 2026Updated 2 weeks ago
- ☆56Jan 14, 2026Updated 2 months ago
- ☆17May 23, 2025Updated 10 months ago
- ☆16Apr 7, 2025Updated 11 months ago
- ☆77Feb 17, 2026Updated last month
- Public Codebase supporting the paper "Modeling Cellular Perturbations with The Sparse Additive Mechanism Shift Variational Autoencoder" b…☆14Oct 20, 2023Updated 2 years ago
- ☆13Jun 6, 2024Updated last year
- ☆15Dec 18, 2024Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆83Aug 10, 2025Updated 7 months ago
- ☆13Aug 14, 2020Updated 5 years ago
- R implementation of GeneTrajectory☆68Apr 5, 2024Updated last year
- An alternative app of Predator sense for Linux to unleash Turbo mode, RGB magic, and custom fan control on Acer Predator & Nitro laptops…☆14Apr 16, 2025Updated 11 months ago
- DeepTACT: predicting three-dimensional chromatin contacts via bootstrapping deep learning☆20Jul 23, 2020Updated 5 years ago
- ☆13Feb 12, 2026Updated last month