qiyunlab / binarenaLinks
BinaRena: Interactive Visualization and Binning of Metagenomic Contigs
☆32Updated 9 months ago
Alternatives and similar repositories for binarena
Users that are interested in binarena are comparing it to the libraries listed below
Sorting:
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆24Updated 10 months ago
- MAGScoT - a MAG scoring and refinement tool☆35Updated 7 months ago
- MAG Circularization Method☆33Updated 3 years ago
- ☆21Updated 4 months ago
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆24Updated 2 years ago
- ☆25Updated last year
- Classify metagenomic contigs as eukaryotic or prokaryotic☆35Updated 2 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated last year
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆45Updated last week
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆23Updated 2 years ago
- Detect contigs of complete circular genomes☆23Updated 6 years ago
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin☆15Updated 8 months ago
- ☆21Updated 4 months ago
- Prophage Activity Estimator☆26Updated last year
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆29Updated 4 months ago
- scripts for microbiome analysis☆11Updated 10 months ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆18Updated 3 years ago
- Population genomics from metagenomes☆11Updated 9 months ago
- ☆14Updated 2 weeks ago
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆19Updated 2 years ago
- Automatic eukaryotic taxonomic classification☆28Updated 3 weeks ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆30Updated 2 years ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆19Updated 2 years ago
- Microbial agile accurate SNP Typer☆29Updated last year
- A Hierarchical Approach to Pangenomics Inference☆11Updated last year
- Phasing for metagenomics using PacBio long reads☆17Updated 3 years ago
- ☆32Updated last year
- A functional profiler for metagenomes using FracMinHash☆16Updated 3 months ago
- Hydrocarbon biodegradation gene annotation☆15Updated 2 years ago