Alternatives and similar repositories for ORForise:

Users that are interested in ORForise are comparing it to the libraries listed below

• raufs / skDER
  skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.
  ☆44Updated last month
• Arkadiy-Garber / SprayNPray
  Rapid and simple taxonomic profiling of genome and metagenome contigs
  ☆28Updated last year
• Shamir-Lab / SCAPP
  SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…
  ☆31Updated 2 years ago
• microbial-pangenomes-lab / microGWAS
  Bacterial GWAS analysis
  ☆40Updated this week
• gbouras13 / pypolca
  Standalone Python re-implementation of the POLCA polisher from MaSuRCA
  ☆34Updated last month
• bacpop / CELEBRIMBOR
  Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs
  ☆23Updated 9 months ago
• michaelkyu / PlasX
  PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture
  ☆33Updated 3 years ago
• snayfach / UHGV
  Unified Human Gut Virome Catalog
  ☆28Updated 9 months ago
• leylabmpi / SynTracker
  SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…
  ☆27Updated 2 months ago
• xinehc / melon
  Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes
  ☆34Updated this week
• mtisza1 / DNA_methylase_finder
  Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes
  ☆11Updated 10 months ago
• Yasas1994 / Jaeger
  Jaeger is a quick and precise tool for detecting phages in sequence assemblies.
  ☆29Updated this week
• MrTomRod / scoary-2
  Calculate assocations between genes and traits
  ☆23Updated last month
• bluenote-1577 / floria
  Strain-level haplotyping for metagenomes with short or long-reads.
  ☆50Updated 2 weeks ago
• adamhockenberry / bacphlip
  A python library for predicting phage lifestyle based on genome sequence
  ☆37Updated last year
• zjshi / Maast
  Microbial agile accurate SNP Typer
  ☆29Updated last year
• HIT-ImmunologyLab / DBSCAN-SWA
  ☆31Updated last year
• ku-cbd / PhageBoost
  Rapid discovery of novel prophages using biological feature engineering and machine learning
  ☆37Updated 4 months ago
• AnantharamanLab / PropagAtE
  Prophage Activity Estimator
  ☆26Updated 10 months ago
• lmlui / Jorg
  MAG Circularization Method
  ☆33Updated 2 years ago
• mtisza1 / Cenote-Taker3
  Discover and annotate the virome
  ☆40Updated last week
• althonos / pyorthoani
  A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.
  ☆25Updated last week
• gatech-genemark / MetaGeneMark-2
  MetaGeneMark-2: Improved Gene Prediction in Metagenomes
  ☆21Updated last year
• leaemiliepradier / PlasForest
  A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes
  ☆18Updated 2 years ago
• deprekate / PHACTS
  A simple program to classify the lifestyle of phages.
  ☆17Updated last year
• hoelzer-lab / ribap
  A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs
  ☆27Updated 6 months ago
• ikmb / MAGScoT
  MAGScoT - a MAG scoring and refinement tool
  ☆34Updated 6 months ago
• MigleSur / GenAPI
  Gene Absence Presence Identification tool.
  ☆26Updated 3 weeks ago
• laxeye / zga
  ZGA prokaryotic genome assembly and annotation pipeline
  ☆12Updated 7 months ago
• mbhall88 / lrge
  Genome size estimation from long read overlaps
  ☆52Updated last week