NickJD / ORForiseLinks
Comparison pipeline for Prokaryote Protein Coding Gene Predictors
☆23Updated this week
Alternatives and similar repositories for ORForise
Users that are interested in ORForise are comparing it to the libraries listed below
Sorting:
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆45Updated last week
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated last year
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆24Updated 10 months ago
- Bacterial GWAS analysis☆40Updated last week
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆30Updated 2 years ago
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆36Updated 2 months ago
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆31Updated this week
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆27Updated 7 months ago
- Calculate assocations between genes and traits☆23Updated 2 months ago
- Microbial agile accurate SNP Typer☆29Updated last year
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆34Updated 3 years ago
- Prophage Activity Estimator☆26Updated last year
- ZGA prokaryotic genome assembly and annotation pipeline☆12Updated 8 months ago
- Genome size estimation from long read overlaps☆56Updated last month
- ☆32Updated last year
- ☆21Updated 4 months ago
- a python package for automated generation of phylogenetic trees from genbank files☆22Updated 2 months ago
- viralFlye pipeline☆18Updated 9 months ago
- Unified Human Gut Virome Catalog☆31Updated 10 months ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆51Updated last month
- A python library for predicting phage lifestyle based on genome sequence☆37Updated last year
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆11Updated 11 months ago
- A simple program to classify the lifestyle of phages.☆17Updated 2 years ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆37Updated 5 months ago
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆20Updated 6 years ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆19Updated 2 years ago
- Colinear block visualisation tool☆31Updated last year
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆30Updated 2 weeks ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆29Updated 4 months ago
- Fast and space-efficient taxonomic classification of long reads☆43Updated 3 weeks ago