NickJD / ORForise
Comparison pipeline for Prokaryote Protein Coding Gene Predictors
☆23Updated 11 months ago
Alternatives and similar repositories for ORForise:
Users that are interested in ORForise are comparing it to the libraries listed below
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆44Updated 3 weeks ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- Bacterial GWAS analysis☆39Updated 3 weeks ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆23Updated 8 months ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆18Updated last year
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆27Updated 5 months ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆50Updated 8 months ago
- Calculate assocations between genes and traits☆23Updated 3 weeks ago
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆11Updated 9 months ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆33Updated 3 years ago
- A python library for predicting phage lifestyle based on genome sequence☆37Updated last year
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆33Updated last month
- Genome size estimation from long read overlaps☆51Updated 3 months ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated 2 years ago
- MAG Circularization Method☆33Updated 2 years ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆33Updated 2 years ago
- Gene Absence Presence Identification tool.☆26Updated last week
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆21Updated last year
- Microbial agile accurate SNP Typer☆29Updated last year
- Prophage Activity Estimator☆26Updated 10 months ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆27Updated 2 months ago
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆25Updated 3 weeks ago
- MAGScoT - a MAG scoring and refinement tool☆32Updated 5 months ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆57Updated last month
- Hydrocarbon biodegradation gene annotation☆15Updated 2 years ago
- Strain Resolution ON Graphs☆47Updated last year
- alignment-free coverage calculation for metagenomic binning >100 times faster☆39Updated 3 weeks ago
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆26Updated 3 weeks ago
- Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes☆19Updated last year
- Fast pairwise transmission inference from single genome and/or metagenomic data☆20Updated 6 months ago