NickJD / ORForise
Comparison pipeline for Prokaryote Protein Coding Gene Predictors
☆22Updated 6 months ago
Related projects ⓘ
Alternatives and complementary repositories for ORForise
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆29Updated last year
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes to select representatives for comparative genomics and met…☆40Updated last week
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆25Updated last month
- A python library for predicting phage lifestyle based on genome sequence☆35Updated last year
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆29Updated 2 years ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆24Updated last week
- Colinear block visualisation tool☆30Updated 9 months ago
- MAG Circularization Method☆33Updated 2 years ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆25Updated 2 weeks ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆17Updated 7 months ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆39Updated 4 months ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆22Updated 3 months ago
- Bacterial GWAS analysis☆31Updated last month
- k-mer based Pipeline to identify the Serotype from Illumina NGS reads☆19Updated last year
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆25Updated 5 years ago
- ☆23Updated 8 months ago
- ☆24Updated last month
- A simple program to classify the lifestyle of phages.☆16Updated last year
- Plasmid analysis using rearrangement distances☆29Updated 2 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆49Updated this week
- Calculate assocations between genes and traits☆19Updated 2 weeks ago
- Pipeline for metagenome and metatranscriptome joint assembly☆18Updated last year
- ☆30Updated 10 months ago
- aweMAGs: a fully automated workflow for eukariotic MAGs☆10Updated last year
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆28Updated 2 months ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆17Updated last year
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆35Updated 2 years ago
- Microbial agile accurate SNP Typer☆29Updated 10 months ago
- MAGScoT - a MAG scoring and refinement tool☆28Updated last month