jhawkey / IS_mapperLinks
IS mapping software
☆55Updated 3 years ago
Alternatives and similar repositories for IS_mapper
Users that are interested in IS_mapper are comparing it to the libraries listed below
Sorting:
- Reorients assembled microbial sequences☆121Updated 3 months ago
- GTDB taxonomy taxdump files with trackable TaxIds☆55Updated 2 months ago
- post processing of bacterial pangenome gene presence/absence matrices☆60Updated 4 months ago
- Sorts amplicons from Nanopore sequencing data based on similarity☆38Updated last month
- Perl script for simulating PCR reactions. Extract sequences from a query based on primer sequences.☆47Updated 3 months ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆49Updated last year
- Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biot…☆68Updated 4 years ago
- a collection of scripts for organising bacterial genomes by species☆77Updated 3 years ago
- PANgenome with Annotations, COre identification, Tree and corresponding Alignments☆74Updated last year
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆96Updated 3 months ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- Prediction of prophages from bacterial genomes☆78Updated last month
- Fast k-mer based tool for multi locus sequence typing (MLST)☆46Updated 4 years ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆59Updated 3 months ago
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆44Updated 2 years ago
- A tool for removing redundant genomes from a set of assemblies☆71Updated last year
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆72Updated last year
- DDBJ Fast Annotation and Submission Tool☆79Updated 2 months ago
- A toolbox for comparative genomics.☆104Updated 4 years ago
- Precise host read removal☆101Updated 3 weeks ago
- Assembly methods for nanopore-based metagenomic sequencing: a comparative study☆18Updated 5 years ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆70Updated 3 weeks ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆72Updated 5 years ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆46Updated 2 weeks ago
- ☆83Updated last year
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆53Updated 2 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆50Updated 2 years ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆79Updated 10 months ago
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆84Updated 2 months ago
- SeqSero2☆37Updated last year