Identify and remove contaminants from metagenome-assembled genomes
☆18Feb 16, 2024Updated 2 years ago
Alternatives and similar repositories for magpurify2
Users that are interested in magpurify2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Improvement of metagenome-assembled genomes☆55Mar 17, 2020Updated 6 years ago
- Pipeline for identification of eukaryotic contigs in metagenomic assemblies☆13Mar 14, 2024Updated 2 years ago
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆72Mar 3, 2026Updated 3 weeks ago
- Deepurify is a tool to filter the contaminated contigs in a MAG with a language model.☆23Jun 3, 2025Updated 9 months ago
- This repository contains python classes and functions to quickly create a profiling tool for pathogen NGS data☆12Updated this week
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- This is a repository for CAMPER.☆17Mar 18, 2024Updated 2 years ago
- ☆25Jun 20, 2023Updated 2 years ago
- ☆51Updated this week
- Classify metagenomic contigs as eukaryotic or prokaryotic☆43Feb 17, 2023Updated 3 years ago
- Linking MAGs with 16S rRNA marker genes☆27Feb 8, 2025Updated last year
- Predict AMPs in (meta)genomes and peptides☆91Nov 24, 2025Updated 4 months ago
- Tool to estimate genome quality of microbial eukaryotes☆39Aug 1, 2025Updated 7 months ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆33Aug 22, 2024Updated last year
- Autometa: Automated Extraction of Genomes from Shotgun Metagenomes☆45Jan 24, 2025Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Metagenomic Binning Algorithm☆51Jan 16, 2026Updated 2 months ago
- SemiBin: metagenomics binning with self-supervised deep learning☆156Feb 19, 2026Updated last month
- Altered version of PathoFact to work more conveniently with SLURM and large input files☆14Nov 7, 2024Updated last year
- Identifying misassemblies via deep learning☆11May 1, 2024Updated last year
- Database and pipeline for protein structure-guided annotations of ecologically relevant functions at the metagenome scale.☆24Nov 2, 2025Updated 4 months ago
- MinPath (Minimal set of Pathways) is a parsimony approach for biological pathway reconstructions using protein family predictions, achiev…☆24Jun 9, 2021Updated 4 years ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆86Dec 27, 2024Updated last year
- Plugin that provides pairing functions to the Polars library☆14Feb 14, 2025Updated last year
- geNomad: Identification of mobile genetic elements☆296Mar 18, 2026Updated last week
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Variational autoencoder for metagenomic binning☆319Feb 23, 2026Updated last month
- Assessing and Improving the quality of metagenomic assemblies☆31Feb 21, 2022Updated 4 years ago
- Assort phage protein sequences into phamilies using MMseqs2☆12Dec 16, 2024Updated last year
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆28Feb 12, 2026Updated last month
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.☆34Jul 12, 2022Updated 3 years ago
- MAGScoT - a MAG scoring and refinement tool☆43Oct 10, 2024Updated last year
- Assessing the quality of prokaryotic genomes, filtering and dereplication☆11Aug 26, 2022Updated 3 years ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22May 14, 2023Updated 2 years ago
- ☆71Mar 10, 2024Updated 2 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆89Aug 13, 2024Updated last year
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆54Sep 7, 2025Updated 6 months ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆104Jan 27, 2026Updated last month
- alignment-free coverage calculation for metagenomic binning >100 times faster☆50Mar 13, 2025Updated last year
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆50Feb 26, 2026Updated 3 weeks ago
- Benchmarking different ways of doing read (taxonomic) classification, with a focus on removal of contamination and MTB classification☆14Apr 8, 2024Updated last year
- aweMAGs: a fully automated workflow for eukariotic MAGs☆22Jun 6, 2023Updated 2 years ago