apcamargo / magpurify2
Identify and remove contaminants from metagenome-assembled genomes
☆18Updated last year
Alternatives and similar repositories for magpurify2:
Users that are interested in magpurify2 are comparing it to the libraries listed below
- Pipeline for identification of eukaryotic contigs in metagenomic assemblies☆12Updated last year
- ☆25Updated last year
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated 2 years ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆44Updated 2 weeks ago
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆24Updated 2 years ago
- Population genomics from metagenomes☆11Updated 6 months ago
- ☆13Updated last year
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆33Updated 3 years ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆18Updated last year
- Classify metagenomic contigs as eukaryotic or prokaryotic☆33Updated 2 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆48Updated 8 months ago
- MAG Circularization Method☆33Updated 2 years ago
- Prophage Activity Estimator☆26Updated 9 months ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆27Updated 5 months ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated last year
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆23Updated last month
- MAGScoT - a MAG scoring and refinement tool☆32Updated 5 months ago
- ☆11Updated last month
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- Calculate assocations between genes and traits☆23Updated 2 weeks ago
- Unified Human Gut Virome Catalog☆27Updated 8 months ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆31Updated 7 months ago
- ☆19Updated 3 years ago
- Hydrocarbon biodegradation gene annotation☆15Updated 2 years ago
- ☆31Updated last year
- Prediction of microbial interactions in complex communities☆12Updated 7 months ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆23Updated 8 months ago
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆18Updated last year
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆33Updated last month